Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G295100.1 | Wheat | nucleus | 67.35 | 71.43 |
| HORVU3Hr1G075370.2 | Barley | nucleus | 66.94 | 70.39 |
| TraesCS3D01G308000.1 | Wheat | mitochondrion | 67.76 | 67.48 |
| EES01535 | Sorghum | plastid | 50.2 | 55.16 |
| Zm00001d043311_P001 | Maize | plastid | 48.98 | 54.3 |
| Os03t0149000-01 | Rice | plastid | 28.16 | 37.3 |
| Os02t0820500-01 | Rice | plastid | 31.43 | 35.65 |
| Os08t0563400-00 | Rice | mitochondrion | 28.57 | 32.56 |
| Os03t0246900-00 | Rice | nucleus | 33.88 | 30.18 |
| Os08t0517100-01 | Rice | cytosol, nucleus, plastid | 11.43 | 29.47 |
| Os03t0149100-01 | Rice | mitochondrion | 31.02 | 29.34 |
| Os10t0162600-00 | Rice | nucleus | 31.43 | 28.62 |
Protein Annotations
| EMBL:AK242468 | EnsemblPlants:Os01t0772100-01 | EnsemblPlantsGene:Os01g0772100 | EntrezGene:4324706 | InterPro:IPR004883 | InterPro:LOB |
| PANTHER:PTHR31529 | PANTHER:PTHR31529:SF8 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:BAD82067.1 | ProteinID:BAS74563.1 |
| RefSeq:XP_015630092.1 | SEG:seg | UniParc:UPI000049E965 | UniProt:Q5N8Y9 | MapMan:15.5.24 | : |
Description
Lateral organ boundaries, LOB domain containing protein. (Os01t0772100-01)
Coordinates
chr1:-:32592931..32593952
Molecular Weight (calculated)
25731.5 Da
IEP (calculated)
7.886
GRAVY (calculated)
-0.147
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MHAAQPPGSS KRRGAVERPA SGAGLQAEEA SSAGPGAPCG ACKFLRRRCV PGCVFAPHFS GCGGSGVGAG VGGRGRERGA AEFAAVHRVF GASNVAKLLS
101: RVPAALRREA ARTVCYEAQA RIADPVYGSV GTILALQHQV SLLQGQLSVL ESQLFNLRVA LASAHPDTPP QHFVVLQPAH SAASTLNQVV VNYDDLPHAV
201: DFMDAEPAAL RGLESLQLSQ PLQREEDEGH RDMNLFSDSV GQRQL
101: RVPAALRREA ARTVCYEAQA RIADPVYGSV GTILALQHQV SLLQGQLSVL ESQLFNLRVA LASAHPDTPP QHFVVLQPAH SAASTLNQVV VNYDDLPHAV
201: DFMDAEPAAL RGLESLQLSQ PLQREEDEGH RDMNLFSDSV GQRQL
001: MADQQRGHNT SDSRRKSLAG KRTSQQTPTS SLSSGGVSMA AATTGTGTAS PCGACKFLRR KCVSGCIFAP HFGSDQGAAR FAAVHKVFGA SNVSKLLHHI
101: PVNRRHDAVV TISYEAQARL SDPVYGCVST ILALQQQVAS LQAELSVVQS QLINSRVAMA NVMQQQTHHQ QQQQQLVVMQ QPEYSNNSSA STTLAGAAMN
201: SFTMTADAAA VSYDVMAPTN LEHSLQPMPP HQQRRGDYQH EDEEESGADF SVAVGSTAVA SKVIFPAEDF HRR
101: PVNRRHDAVV TISYEAQARL SDPVYGCVST ILALQQQVAS LQAELSVVQS QLINSRVAMA NVMQQQTHHQ QQQQQLVVMQ QPEYSNNSSA STTLAGAAMN
201: SFTMTADAAA VSYDVMAPTN LEHSLQPMPP HQQRRGDYQH EDEEESGADF SVAVGSTAVA SKVIFPAEDF HRR
Arabidopsis Description
LBD20LOB domain-containing protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRV3]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.