Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 3
- mitochondrion 5
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES14059 | Sorghum | mitochondrion | 73.02 | 73.02 |
| Zm00001d031882_P001 | Maize | plastid | 71.16 | 71.16 |
| CDY14832 | Canola | mitochondrion, nucleus | 45.12 | 48.74 |
| CDY00547 | Canola | mitochondrion, nucleus | 47.91 | 47.47 |
| AT3G58190.1 | Thale cress | plastid | 47.91 | 47.25 |
| CDX88974 | Canola | mitochondrion, nucleus | 47.91 | 47.03 |
| CDX71962 | Canola | plastid | 47.91 | 46.61 |
| Bra014581.1-P | Field mustard | mitochondrion, nucleus | 47.44 | 46.58 |
| CDY06048 | Canola | plastid | 47.91 | 45.78 |
| Bra007385.1-P | Field mustard | plastid | 46.51 | 44.44 |
| Os03t0149100-01 | Rice | mitochondrion | 53.02 | 44.02 |
| Os03t0149000-01 | Rice | plastid | 36.28 | 42.16 |
| Os02t0820500-01 | Rice | plastid | 42.33 | 42.13 |
| AT2G42440.1 | Thale cress | mitochondrion, nucleus | 45.58 | 40.16 |
| Bra016876.1-P | Field mustard | nucleus | 45.12 | 36.74 |
| CDY47970 | Canola | nucleus | 45.12 | 36.74 |
| Os03t0246900-00 | Rice | nucleus | 39.53 | 30.91 |
| Os10t0162600-00 | Rice | nucleus | 36.74 | 29.37 |
| Os01t0772100-01 | Rice | mitochondrion | 32.56 | 28.57 |
| Os08t0517100-01 | Rice | cytosol, nucleus, plastid | 9.77 | 22.11 |
Protein Annotations
| EnsemblPlants:Os08t0563400-00 | EnsemblPlantsGene:Os08g0563400 | EntrezGene:4346341 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil |
| PANTHER:PTHR31529 | PANTHER:PTHR31529:SF2 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:BAD09627.1 | ProteinID:BAF24440.1 |
| ProteinID:BAT06729.1 | ProteinID:EAZ43677.1 | RefSeq:XP_015648252.1 | SEG:seg | UniParc:UPI000023AEB1 | UniProt:Q6ZBW8 |
| MapMan:15.5.24 | : | : | : | : | : |
Description
Similar to LOB domain protein 17. (Os08t0563400-00)
Coordinates
chr8:-:28212725..28213764
Molecular Weight (calculated)
23240.4 Da
IEP (calculated)
6.282
GRAVY (calculated)
-0.160
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MTGLGSPCGA CKFLRRKCVK GCVFAPYFCH EQGAAHFAAI HKVFGASNAS KILMHLPVSD RCEAAVTMSY EAQARLRDPI YGCVAHIFSL QQQVVSLQAQ
101: LESLKAQATQ GYGDGCSISS PQNDSCGNML TSIVQDEQQF VGPTMASNSS VKNENHSYIA NGHLAPMSAQ SSQGFEAELC MAEYSNTNPC CSVQGNWYHD
201: MEDLQSVAFA YLNQA
101: LESLKAQATQ GYGDGCSISS PQNDSCGNML TSIVQDEQQF VGPTMASNSS VKNENHSYIA NGHLAPMSAQ SSQGFEAELC MAEYSNTNPC CSVQGNWYHD
201: MEDLQSVAFA YLNQA
001: MTSSSSSSGS PCGACKFLRR KCAKGCVFAP YFCHEQGASH FAAIHKVFGA SNASKLLSHL PISDRCEAAI TISYEAQARL QDPIYGCVSH IFALQQQVVN
101: LQAELEILKQ QAAQSMIFAD SPTSENPNSY YGDTTKAPYH HDHQNIYHHH DQTHLVYQTG SSGTVQHGDA TESSYHNETS SGMGEFSIYS DLEQHLNTFN
201: QDHLKELQSA NFGYISFS
101: LQAELEILKQ QAAQSMIFAD SPTSENPNSY YGDTTKAPYH HDHQNIYHHH DQTHLVYQTG SSGTVQHGDA TESSYHNETS SGMGEFSIYS DLEQHLNTFN
201: QDHLKELQSA NFGYISFS
Arabidopsis Description
LBD29LBD29 [Source:UniProtKB/TrEMBL;Acc:A0A178VM67]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.