Factsheet for Bra014581.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88974	Canola	mitochondrion, nucleus	99.09	99.09
CDY00547	Canola	mitochondrion, nucleus	95.43	96.31
AT3G58190.1	Thale cress	plastid	84.47	84.86
Bra007385.1-P	Field mustard	plastid	86.76	84.44
Bra016876.1-P	Field mustard	nucleus	59.82	49.62
Os08t0563400-00	Rice	mitochondrion	46.58	47.44
Zm00001d031882_P001	Maize	plastid	44.29	45.12
EES14059	Sorghum	mitochondrion	43.84	44.65
Bra018260.1-P	Field mustard	nucleus	39.27	44.56
Bra001087.1-P	Field mustard	plastid	22.83	41.67
Bra009161.1-P	Field mustard	nucleus	34.7	41.53
Bra040312.1-P	Field mustard	cytosol, nucleus, plastid	31.05	40.48
Bra004908.1-P	Field mustard	cytosol, nucleus, plastid	32.42	37.77
Bra021737.1-P	Field mustard	cytosol	41.1	37.66
Bra004693.1-P	Field mustard	plastid	41.55	37.3
Bra016877.1-P	Field mustard	nucleus	41.55	36.99
Bra000257.1-P	Field mustard	nucleus	39.73	36.55
Bra037323.1-P	Field mustard	plastid	35.62	34.82
Bra037322.1-P	Field mustard	nucleus	35.16	34.68
Bra008514.1-P	Field mustard	cytosol, nucleus, plastid	34.25	33.48
Bra004910.1-P	Field mustard	plastid	36.99	32.02
Bra025217.1-P	Field mustard	cytosol	15.53	31.78
Bra040311.1-P	Field mustard	nucleus	36.07	30.5
Bra034867.1-P	Field mustard	plastid	23.29	29.65
Bra036436.1-P	Field mustard	plastid	36.07	28.73
Bra032938.1-P	Field mustard	nucleus	18.26	13.61

Protein Annotations

EnsemblPlants:Bra014581.1	EnsemblPlants:Bra014581.1-P	EnsemblPlantsGene:Bra014581	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31529	PANTHER:PTHR31529:SF2	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI00025441D6
UniProt:M4DDL3	MapMan:15.5.24	:	:	:	:

Description

AT3G58190 (E=1e-089) LBD29, ASL16 | LBD29 (LATERAL ORGAN BOUNDARIES-DOMAIN 29)

Coordinates

chrA04:+:1568864..1569640

Molecular Weight (calculated)

24377.3 Da

IEP (calculated)

6.786

GRAVY (calculated)

-0.464

Length

219 amino acids

Sequence
(BLAST)

001: MSSSGSPCGA CKFLRRKCAN GCVFAPYFCH EQGASHFAAI HKVFGASNAS KILSNLPISD RCEAAITISY EAQARLHDPI YGCVSHIFAL QQQVVNLQAQ
101: LEILKQQVAQ SMMFADSPSS ENPNSYYGDN TKTSYHHDHH QEHRNIHHHH HDETRLVYQT GSSGMVQHGD ATVNSYPTGN CSGFGEVFIY PDLEQHLNSF
201: NQDHLKELQS ANFGYISFS

Best Arabidopsis Sequence Match ( AT3G58190.1 )
(BLAST)

001: MTSSSSSSGS PCGACKFLRR KCAKGCVFAP YFCHEQGASH FAAIHKVFGA SNASKLLSHL PISDRCEAAI TISYEAQARL QDPIYGCVSH IFALQQQVVN
101: LQAELEILKQ QAAQSMIFAD SPTSENPNSY YGDTTKAPYH HDHQNIYHHH DQTHLVYQTG SSGTVQHGDA TESSYHNETS SGMGEFSIYS DLEQHLNTFN
201: QDHLKELQSA NFGYISFS

Arabidopsis Description

LBD29LBD29 [Source:UniProtKB/TrEMBL;Acc:A0A178VM67]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.