Factsheet for Bra040311.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68635	Canola	nucleus	99.61	99.61
CDY57109	Canola	plastid	92.66	92.31
AT2G45420.1	Thale cress	plastid	86.87	85.88
Bra004910.1-P	Field mustard	plastid	83.78	85.77
VIT_15s0048g00830.t01	Wine grape	nucleus	62.55	64.54
GSMUA_Achr5P11330_001	Banana	plastid	58.69	63.07
GSMUA_Achr2P11240_001	Banana	plastid	55.6	61.02
Bra037323.1-P	Field mustard	plastid	52.12	60.27
KRH40590	Soybean	plastid	53.67	59.91
Bra008514.1-P	Field mustard	cytosol, nucleus, plastid	51.74	59.82
KRH65254	Soybean	plastid	57.92	59.76
KRH00577	Soybean	plastid	53.67	59.4
KRH76282	Soybean	plastid	55.6	58.3
GSMUA_Achr1P02520_001	Banana	cytosol, nucleus, plastid	54.44	58.26
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	57.14	57.59
Zm00001d028413_P001	Maize	plastid	57.53	57.31
Zm00001d047921_P001	Maize	plastid	57.92	56.6
Os03t0246900-00	Rice	nucleus	59.46	56.0
HORVU4Hr1G063160.1	Barley	plastid	55.21	55.86
TraesCS4D01G225200.1	Wheat	nucleus	55.21	55.0
EER92557	Sorghum	nucleus	58.3	54.71
TraesCS4A01G067300.1	Wheat	nucleus	55.98	54.51
TraesCS4B01G224600.1	Wheat	plastid	54.44	53.82
Bra001087.1-P	Field mustard	plastid	23.55	50.83
Os10t0162600-00	Rice	nucleus	52.12	50.19
Bra040312.1-P	Field mustard	cytosol, nucleus, plastid	32.43	50.0
KXG38649	Sorghum	plastid	49.03	48.85
Zm00001d030364_P001	Maize	plastid	45.95	48.57
Bra004908.1-P	Field mustard	cytosol, nucleus, plastid	32.05	44.15
Bra037322.1-P	Field mustard	nucleus	36.68	42.79
Bra018260.1-P	Field mustard	nucleus	29.34	39.38
Bra009161.1-P	Field mustard	nucleus	27.8	39.34
Bra000257.1-P	Field mustard	nucleus	33.59	36.55
Bra004693.1-P	Field mustard	plastid	34.36	36.48
Bra014581.1-P	Field mustard	mitochondrion, nucleus	30.5	36.07
GSMUA_Achr4P28810_001	Banana	nucleus	40.54	35.59
Bra016877.1-P	Field mustard	nucleus	33.2	34.96
Bra007385.1-P	Field mustard	plastid	29.73	34.22
Bra021737.1-P	Field mustard	cytosol	31.27	33.89
Bra036436.1-P	Field mustard	plastid	35.91	33.82
Bra034867.1-P	Field mustard	plastid	21.24	31.98
Bra025217.1-P	Field mustard	cytosol	13.13	31.78
Bra016876.1-P	Field mustard	nucleus	29.34	28.79
Bra032938.1-P	Field mustard	nucleus	16.6	14.63

Protein Annotations

EnsemblPlants:Bra040311.1	EnsemblPlants:Bra040311.1-P	EnsemblPlantsGene:Bra040311	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31529
PANTHER:PTHR31529:SF3	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI0002544265	UniProt:M4FGT3
MapMan:15.5.24	:	:	:	:	:

Description

AT2G45420 (E=1e-084) LBD18 | LBD18 (LOB DOMAIN-CONTAINING PROTEIN 18)

Coordinates

chrA04:+:18545871..18547692

Molecular Weight (calculated)

27133.9 Da

IEP (calculated)

8.079

GRAVY (calculated)

-0.254

Length

259 amino acids

Sequence
(BLAST)

001: MSGGGNTITP MGGGGCGGRS SGSGGTSGGG GGGPCGACKF LRRKCVPGCI FAPYFDSEQG SAYFAAVHKV FGASNVSKLL LHIPVHRRSD AVVTICYEAQ
101: ARIRDPIYGC VAHIFALQQQ VVNLQAEVSY VQAHLASLEL PDPQTRPPPP PQSQPQSLFF TPPPLSITDL AASVSPLPST YDLASTFDHA ASPSSWATQQ
201: RRFVDPRHQY GRSLSSSSAT VGLAGGNSDL EALAHELLHR QGSPPPTTTD DSPSRTMSR

Best Arabidopsis Sequence Match ( AT2G45420.1 )
(BLAST)

001: MSGGGNTITA VGGGGGGCGG GGSSGGGGSS GGGGGGPCGA CKFLRRKCVP GCIFAPYFDS EQGSAYFAAV HKVFGASNVS KLLLHIPVHR RSDAVVTICY
101: EAQARIRDPI YGCVAHIFAL QQQVVNLQAE VSYLQAHLAS LELPQPQTRP QPMPQPQPLF FTPPPPLAIT DLPASVSPLP STYDLASIFD QTTSSSAWAT
201: QQRRFIDPRH QYGVSSSSSS VAVGLGGENS HDLQALAHEL LHRQGSPPPA ATDHSPSRTM SR

Arabidopsis Description

LBD18LBD18 [Source:UniProtKB/TrEMBL;Acc:A0A178VVX7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.