Factsheet for Bra004693.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64515	Canola	nucleus, plastid	95.9	95.9
Bra016877.1-P	Field mustard	nucleus	90.98	90.24
AT2G42430.1	Thale cress	plastid	90.16	89.8
Bra000257.1-P	Field mustard	nucleus	85.66	87.82
KRH19529	Soybean	plastid	34.43	69.42
VIT_07s0005g03030.t01	Wine grape	plastid	50.82	63.59
KRH32155	Soybean	plastid	52.05	59.62
GSMUA_Achr1P01350_001	Banana	nucleus	47.95	58.21
PGSC0003DMT400025135	Potato	nucleus	52.46	57.92
Solyc09g066260.2.1	Tomato	nucleus	51.64	54.78
EER95498	Sorghum	cytosol, nucleus, plastid	36.89	53.57
Zm00001d027678_P001	Maize	cytosol, nucleus, plastid	36.48	53.29
GSMUA_Achr5P13230_001	Banana	mitochondrion, plastid	41.8	52.85
Solyc06g083930.1.1	Tomato	nucleus	41.8	52.04
PGSC0003DMT400051680	Potato	nucleus	41.39	51.79
Bra001087.1-P	Field mustard	plastid	25.0	50.83
HORVU4Hr1G080150.1	Barley	plastid	37.7	50.0
TraesCS4A01G415300.1	Wheat	plastid	37.3	49.19
Os03t0149000-01	Rice	plastid	37.3	49.19
Zm00001d051891_P001	Maize	plastid	43.44	49.07
EES07771	Sorghum	plastid	43.03	48.84
TraesCS6D01G382600.1	Wheat	plastid	41.8	48.8
Os02t0820500-01	Rice	plastid	43.03	48.61
TraesCS6A01G398400.1	Wheat	plastid	40.98	48.54
TraesCS4D01G312700.1	Wheat	plastid	36.89	48.13
TraesCS4B01G316100.1	Wheat	plastid	36.48	47.59
HORVU0Hr1G017670.2	Barley	plastid	40.57	47.14
TraesCS6B01G438700.1	Wheat	plastid	40.16	46.45
Bra040312.1-P	Field mustard	cytosol, nucleus, plastid	29.1	42.26
Bra018260.1-P	Field mustard	nucleus	33.2	41.97
Bra014581.1-P	Field mustard	mitochondrion, nucleus	37.3	41.55
Bra004908.1-P	Field mustard	cytosol, nucleus, plastid	30.74	39.89
Bra009161.1-P	Field mustard	nucleus	29.51	39.34
Bra037322.1-P	Field mustard	nucleus	35.66	39.19
Bra007385.1-P	Field mustard	plastid	35.25	38.22
Bra037323.1-P	Field mustard	plastid	34.02	37.05
Bra008514.1-P	Field mustard	cytosol, nucleus, plastid	31.97	34.82
Bra004910.1-P	Field mustard	plastid	36.07	34.78
Bra025217.1-P	Field mustard	cytosol	15.16	34.58
Bra040311.1-P	Field mustard	nucleus	36.48	34.36
Bra021737.1-P	Field mustard	cytosol	33.61	34.31
Bra036436.1-P	Field mustard	plastid	38.52	34.18
Bra034867.1-P	Field mustard	plastid	22.95	32.56
Bra016876.1-P	Field mustard	nucleus	31.56	29.17
Bra032938.1-P	Field mustard	nucleus	18.44	15.31

Protein Annotations

EnsemblPlants:Bra004693.1	EnsemblPlants:Bra004693.1-P	EnsemblPlantsGene:Bra004693	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31529
PANTHER:PTHR31529:SF4	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI00025478A5	UniProt:M4CKF8
MapMan:15.5.24	:	:	:	:	:

Description

AT2G42430 (E=4e-089) LBD16, ASL18 | LBD16 (LATERAL ORGAN BOUNDARIES-DOMAIN 16)

Coordinates

chrA05:+:1378014..1379047

Molecular Weight (calculated)

26263.6 Da

IEP (calculated)

8.084

GRAVY (calculated)

-0.404

Length

244 amino acids

Sequence
(BLAST)

001: MAASGNGTTA GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ
101: QVAYLQAQVM QMKAQIAGHQ TSAAGDLRNS SESTHEYTTW QQSSGSPIGS AYAAPYDHHH PYYGHVNPNN QVSPQSSLEE SLSSTSSNVT TTANVRETQQ
201: TGGGVYRHGG LGFHEGYPNK KRSVNYCNSD LGELQALALR MMKN

Best Arabidopsis Sequence Match ( AT2G42430.1 )
(BLAST)

001: MASSGNGTTA GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN

Arabidopsis Description

LBD16LOB domain-containing protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLB7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.