Factsheet for GSMUA_Achr5P13230_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

nucleus 3
mitochondrion 4
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35378	Canola	cytosol, nucleus, plastid	39.9	74.76
KRH19529	Soybean	plastid	37.31	59.5
GSMUA_Achr1P01350_001	Banana	nucleus	59.59	57.21
Zm00001d027678_P001	Maize	cytosol, nucleus, plastid	44.56	51.5
EER95498	Sorghum	cytosol, nucleus, plastid	44.56	51.19
GSMUA_Achr3P27340_001	Banana	mitochondrion, plastid	48.19	50.82
EES07771	Sorghum	plastid	52.85	47.44
KRH32155	Soybean	plastid	52.33	47.42
Zm00001d051891_P001	Maize	plastid	52.33	46.76
Os03t0149000-01	Rice	plastid	44.56	46.49
Os02t0820500-01	Rice	plastid	51.81	46.3
GSMUA_Achr1P01360_001	Banana	mitochondrion, nucleus, plastid	50.26	45.33
TraesCS6A01G398400.1	Wheat	plastid	47.15	44.17
TraesCS6D01G382600.1	Wheat	plastid	47.67	44.02
HORVU0Hr1G017670.2	Barley	plastid	47.67	43.81
TraesCS4A01G415300.1	Wheat	plastid	41.45	43.24
TraesCS6B01G438700.1	Wheat	plastid	47.15	43.13
HORVU4Hr1G080150.1	Barley	plastid	40.93	42.93
TraesCS4D01G312700.1	Wheat	plastid	41.45	42.78
GSMUA_Achr1P06580_001	Banana	mitochondrion	46.11	42.58
TraesCS4B01G316100.1	Wheat	plastid	40.93	42.25
AT2G42430.1	Thale cress	plastid	53.37	42.04
CDY70198	Canola	nucleus	52.85	41.8
CDY64515	Canola	nucleus, plastid	52.85	41.8
Bra004693.1-P	Field mustard	plastid	52.85	41.8
Bra000257.1-P	Field mustard	nucleus	51.3	41.6
GSMUA_Achr4P25190_001	Banana	mitochondrion	46.11	41.59
CDY47969	Canola	nucleus	52.85	41.46
CDY14831	Canola	nucleus	52.85	41.46
CDY22562	Canola	nucleus	50.78	41.18
GSMUA_AchrUn_...	Banana	mitochondrion	48.19	41.15
Bra016877.1-P	Field mustard	nucleus	52.33	41.06
GSMUA_AchrUn_...	Banana	mitochondrion	49.22	40.95
GSMUA_Achr10P...	Banana	mitochondrion	45.6	40.18
GSMUA_Achr2P11240_001	Banana	plastid	48.19	39.41
GSMUA_Achr11P...	Banana	mitochondrion	40.93	37.44
GSMUA_Achr5P11330_001	Banana	plastid	46.11	36.93
GSMUA_Achr1P02520_001	Banana	cytosol, nucleus, plastid	45.6	36.36
GSMUA_Achr8P14330_001	Banana	mitochondrion	44.04	36.32
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	46.63	35.02
GSMUA_Achr11P...	Banana	mitochondrion	26.94	33.12
GSMUA_Achr4P28810_001	Banana	nucleus	41.97	27.46

Protein Annotations

EnsemblPlants:GSMUA_Achr5P13230_001	EnsemblPlants:GSMUA_Achr5T13230_001	EnsemblPlantsGene:GSMUA_Achr5G13230_001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31529	PANTHER:PTHR31529:SF4	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI000295D663
UniProt:M0SY52	MapMan:15.5.24	:	:	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_5.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr5G13230_001]

Coordinates

chr5:+:9471548..9472536

Molecular Weight (calculated)

20973.1 Da

IEP (calculated)

8.496

GRAVY (calculated)

-0.161

Length

193 amino acids

Sequence
(BLAST)

001: MASGGVSPCG ACKFLRRKCA RDCVFAPYFS SEQGAARFAA IHKVFGASNA SKLLLHVPQA ARCEAVVAIA YEAQARLRDP VYGCVGRILA LQHQVSSLQL
101: QLLQMKAQLA QCMLSPQSTG NQWQGNDGSS LFRPCSPAWE SMSSRGSFTF TDQDRNCLLP LQDVFSKESG KSRATQAETG ELQDLAFRMT GEL

Best Arabidopsis Sequence Match ( AT2G42430.1 )
(BLAST)

001: MASSGNGTTA GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN

Arabidopsis Description

LBD16LOB domain-containing protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLB7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.