Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 4
- plastid 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_07s0005g03030.t01 | Wine grape | plastid | 63.93 | 60.0 |
| KRG95644 | Soybean | nucleus | 63.39 | 54.46 |
| KRH67347 | Soybean | plastid | 62.3 | 53.52 |
| PGSC0003DMT400025135 | Potato | nucleus | 61.2 | 50.68 |
| Solyc09g066260.2.1 | Tomato | nucleus | 62.3 | 49.57 |
| Solyc06g083930.1.1 | Tomato | nucleus | 51.91 | 48.47 |
| GSMUA_Achr1P01350_001 | Banana | nucleus | 53.01 | 48.26 |
| PGSC0003DMT400051680 | Potato | nucleus | 51.37 | 48.21 |
| GSMUA_Achr5P13230_001 | Banana | mitochondrion, plastid | 50.82 | 48.19 |
| GSMUA_Achr1P06580_001 | Banana | mitochondrion | 45.9 | 40.19 |
| GSMUA_Achr11P... | Banana | mitochondrion | 44.81 | 38.86 |
| GSMUA_Achr8P14330_001 | Banana | mitochondrion | 48.63 | 38.03 |
| GSMUA_Achr1P01360_001 | Banana | mitochondrion, nucleus, plastid | 44.26 | 37.85 |
| GSMUA_Achr4P25190_001 | Banana | mitochondrion | 43.72 | 37.38 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 46.99 | 37.07 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 45.36 | 36.73 |
| GSMUA_Achr10P... | Banana | mitochondrion | 43.72 | 36.53 |
| GSMUA_Achr2P11240_001 | Banana | plastid | 43.72 | 33.9 |
| GSMUA_Achr5P11330_001 | Banana | plastid | 44.26 | 33.61 |
| GSMUA_Achr1P02520_001 | Banana | cytosol, nucleus, plastid | 43.72 | 33.06 |
| GSMUA_Achr11P... | Banana | mitochondrion | 27.87 | 32.48 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 44.26 | 31.52 |
| GSMUA_Achr4P28810_001 | Banana | nucleus | 38.8 | 24.07 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P27340_001 | EnsemblPlants:GSMUA_Achr3T27340_001 | EnsemblPlantsGene:GSMUA_Achr3G27340_001 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil |
| PANTHER:PTHR31529 | PANTHER:PTHR31529:SF4 | PFAM:PF03195 | PFscan:PS50891 | SEG:seg | UniParc:UPI0002951C46 |
| UniProt:M0SIA0 | MapMan:15.5.24 | : | : | : | : |
Description
DUF260 domain containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G27340_001]
Coordinates
chr3:+:26889865..26890505
Molecular Weight (calculated)
20229.3 Da
IEP (calculated)
7.659
GRAVY (calculated)
-0.115
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MATGAGSPCG ACKFLRRKCT SDCIFAPYFG SDQSPAQFAA IHRVFGASNV SKLLAQVPVH DRCEAVATIA YEAQARIKDP VYGCVGHIFA LQQQVAVLQA
101: QVMQVKAQLA YRAALSRVLE DQQCQENFSV FLQSDSEYGA DGVLLMQQMG CREDVSAQEF CRKRTPHYEF GELQAMAQRM MRS
101: QVMQVKAQLA YRAALSRVLE DQQCQENFSV FLQSDSEYGA DGVLLMQQMG CREDVSAQEF CRKRTPHYEF GELQAMAQRM MRS
001: MASSGNGTTA GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN
Arabidopsis Description
LBD16LOB domain-containing protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLB7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.