Factsheet for GSMUA_AchrUn_randomP10470_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P11330_001	Banana	plastid	73.93	78.84
GSMUA_Achr1P02520_001	Banana	cytosol, nucleus, plastid	71.6	76.03
PGSC0003DMT400033253	Potato	plastid	40.86	75.54
GSMUA_Achr2P11240_001	Banana	plastid	66.15	72.03
VIT_15s0048g00830.t01	Wine grape	nucleus	68.09	69.72
Solyc01g091420.1.1	Tomato	plastid	63.81	60.52
KRH65254	Soybean	plastid	58.37	59.76
KRH76282	Soybean	plastid	57.2	59.51
CDY18932	Canola	plastid	57.59	58.96
KRH00577	Soybean	plastid	53.31	58.55
Bra004910.1-P	Field mustard	plastid	57.59	58.5
AT4G00220.1	Thale cress	plastid	51.36	57.89
CDY68635	Canola	nucleus	57.98	57.53
CDY57109	Canola	plastid	57.98	57.31
CDY07236	Canola	plastid	49.81	57.14
CDY54923	Canola	cytosol, nucleus, plastid	49.81	57.14
Bra040311.1-P	Field mustard	nucleus	57.59	57.14
Bra037323.1-P	Field mustard	plastid	49.81	57.14
Bra008514.1-P	Field mustard	cytosol, nucleus, plastid	49.81	57.14
KRH40590	Soybean	plastid	51.36	56.9
AT2G45420.1	Thale cress	plastid	57.98	56.87
CDY69735	Canola	cytosol, nucleus, plastid	49.42	56.7
GSMUA_Achr5P13230_001	Banana	mitochondrion, plastid	35.02	46.63
GSMUA_Achr3P27340_001	Banana	mitochondrion, plastid	31.52	44.26
GSMUA_Achr4P25190_001	Banana	mitochondrion	36.58	43.93
GSMUA_Achr1P01360_001	Banana	mitochondrion, nucleus, plastid	35.8	42.99
GSMUA_Achr1P06580_001	Banana	mitochondrion	34.63	42.58
GSMUA_Achr1P01350_001	Banana	nucleus	33.07	42.29
GSMUA_Achr10P...	Banana	mitochondrion	35.41	41.55
GSMUA_AchrUn_...	Banana	mitochondrion	35.8	40.71
GSMUA_AchrUn_...	Banana	mitochondrion	36.58	40.52
GSMUA_Achr11P...	Banana	mitochondrion	33.07	40.28
GSMUA_Achr4P28810_001	Banana	nucleus	45.53	39.66
GSMUA_Achr8P14330_001	Banana	mitochondrion	34.24	37.61
GSMUA_Achr11P...	Banana	mitochondrion	19.84	32.48

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP10470_001	EnsemblPlants:GSMUA_AchrUn_randomT10470_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG10470_001	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31529
PANTHER:PTHR31529:SF3	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI000294B966	UniProt:M0U806
MapMan:15.5.24	:	:	:	:	:

Description

LOB domain-containing protein 30 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG10470_001]

Coordinates

chrchrUn_random:+:50578516..50579786

Molecular Weight (calculated)

26439.5 Da

IEP (calculated)

8.300

GRAVY (calculated)

-0.220

Length

257 amino acids

Sequence
(BLAST)

001: MSGNVSPSLS VGGGSGSVGG GVGGGGAGGG AGGGGGGGGG LGPCGACKFL RRKCMAGCIF APYFDAEQGA ARFAAVHKVF GASNASKLLL HIPAHKRHDA
101: VITICYEAQA RLRDPVYGCV AHIFALQQQV VSLQAELSYL QAHLATLELP SPPPPPPPPS LLAPTPFSTS DLTSASSLPS TGDLSTMFDP QVQPEWPLQQ
201: QQQQQQRPPT ELRPHLSNRA RNVLGNPGCG GGDLQALARE LLDRHRSTTS EPPPISK

Best Arabidopsis Sequence Match ( AT4G00220.1 )
(BLAST)

001: MSSSGNPSSS SGGGGGPCGA CKFLRRKCVA GCIFAPYFDS EQGAAHFAAV HKVFGASNVS KLLHHVPEHK RPDAVVSICF EAQARLRDPI YGCVSHIVSL
101: QQQVVSLQTE LSYLQAHLAT LELPQPQPPQ VPVSSSGSLQ ALSITDLPTI SPSVYDLSSI FEPVMSSTWA MQQQPRPSDH LFGVPSSSNM GGGGELQALA
201: REFIHGGQMP AQPSPGTSGS ASSVIKRE

Arabidopsis Description

LBD30LOB domain-containing protein 30 [Source:UniProtKB/Swiss-Prot;Acc:O81323]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.