Factsheet for Bra004910.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18932	Canola	plastid	96.84	97.61
AT2G45420.1	Thale cress	plastid	90.91	87.79
Bra040311.1-P	Field mustard	nucleus	85.77	83.78
VIT_15s0048g00830.t01	Wine grape	nucleus	63.64	64.14
GSMUA_Achr5P11330_001	Banana	plastid	59.68	62.66
KRH40590	Soybean	plastid	56.92	62.07
GSMUA_Achr2P11240_001	Banana	plastid	57.31	61.44
KRH00577	Soybean	plastid	56.52	61.11
GSMUA_Achr1P02520_001	Banana	cytosol, nucleus, plastid	57.31	59.92
Bra008514.1-P	Field mustard	cytosol, nucleus, plastid	52.57	59.38
KRH65254	Soybean	plastid	58.1	58.57
Bra037323.1-P	Field mustard	plastid	51.78	58.48
Zm00001d047921_P001	Maize	plastid	60.87	58.11
Zm00001d028413_P001	Maize	plastid	59.68	58.08
KRH76282	Soybean	plastid	56.52	57.89
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	58.5	57.59
HORVU4Hr1G063160.1	Barley	plastid	57.31	56.64
Os03t0246900-00	Rice	nucleus	61.26	56.36
EER92557	Sorghum	nucleus	60.87	55.8
TraesCS4D01G225200.1	Wheat	nucleus	57.31	55.77
TraesCS4A01G067300.1	Wheat	nucleus	58.5	55.64
TraesCS4B01G224600.1	Wheat	plastid	56.92	54.96
Os10t0162600-00	Rice	nucleus	54.94	51.67
Bra001087.1-P	Field mustard	plastid	24.51	51.67
KXG38649	Sorghum	plastid	52.57	51.15
Zm00001d030364_P001	Maize	plastid	49.01	50.61
Bra040312.1-P	Field mustard	cytosol, nucleus, plastid	33.2	50.0
Bra004908.1-P	Field mustard	cytosol, nucleus, plastid	32.81	44.15
Bra037322.1-P	Field mustard	nucleus	37.15	42.34
Bra009161.1-P	Field mustard	nucleus	28.85	39.89
Bra018260.1-P	Field mustard	nucleus	29.64	38.86
Bra014581.1-P	Field mustard	mitochondrion, nucleus	32.02	36.99
Bra000257.1-P	Field mustard	nucleus	34.39	36.55
GSMUA_Achr4P28810_001	Banana	nucleus	42.29	36.27
Bra004693.1-P	Field mustard	plastid	34.78	36.07
Bra016877.1-P	Field mustard	nucleus	34.39	35.37
Bra007385.1-P	Field mustard	plastid	31.23	35.11
Bra021737.1-P	Field mustard	cytosol	32.41	34.31
Bra036436.1-P	Field mustard	plastid	36.36	33.45
Bra034867.1-P	Field mustard	plastid	21.74	31.98
Bra025217.1-P	Field mustard	cytosol	13.44	31.78
Bra016876.1-P	Field mustard	nucleus	30.04	28.79
Bra032938.1-P	Field mustard	nucleus	17.0	14.63

Protein Annotations

EnsemblPlants:Bra004910.1	EnsemblPlants:Bra004910.1-P	EnsemblPlantsGene:Bra004910	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31529
PANTHER:PTHR31529:SF3	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI0002547F1F	UniProt:M4CL24
MapMan:15.5.24	:	:	:	:	:

Description

AT2G45420 (E=2e-079) LBD18 | LBD18 (LOB DOMAIN-CONTAINING PROTEIN 18)

Coordinates

chrA05:+:2431903..2433701

Molecular Weight (calculated)

26066.8 Da

IEP (calculated)

8.289

GRAVY (calculated)

-0.161

Length

253 amino acids

Sequence
(BLAST)

001: MSGGGNTIPS VGGAGCGGGG GSSSGGGGSS GGGGGPCGAC KFLRRKCVPG CIFAPYFDSE QGSAYFAAVH KVFGASNVSK LLLHIPVHRR ADAVVTICYE
101: AQARIRDPIY GCVAHIFALQ QQVVNLQAEV SYLQSHLASL ELPQPQTRPP PITQPQPLFF TPPPPLSITD LPASVSPYDL ATIVDPPTSW ATQQRRFVDP
201: RNQYGGSSSS SSAAVGLGGG NSDLQALAHE LLHRQGSPPP AATDGSPSRS MSR

Best Arabidopsis Sequence Match ( AT2G45420.1 )
(BLAST)

001: MSGGGNTITA VGGGGGGCGG GGSSGGGGSS GGGGGGPCGA CKFLRRKCVP GCIFAPYFDS EQGSAYFAAV HKVFGASNVS KLLLHIPVHR RSDAVVTICY
101: EAQARIRDPI YGCVAHIFAL QQQVVNLQAE VSYLQAHLAS LELPQPQTRP QPMPQPQPLF FTPPPPLAIT DLPASVSPLP STYDLASIFD QTTSSSAWAT
201: QQRRFIDPRH QYGVSSSSSS VAVGLGGENS HDLQALAHEL LHRQGSPPPA ATDHSPSRTM SR

Arabidopsis Description

LBD18LBD18 [Source:UniProtKB/TrEMBL;Acc:A0A178VVX7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.