Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18932 | Canola | plastid | 88.55 | 92.43 |
| Bra004910.1-P | Field mustard | plastid | 87.79 | 90.91 |
| Bra040311.1-P | Field mustard | nucleus | 85.88 | 86.87 |
| CDY68635 | Canola | nucleus | 85.5 | 86.49 |
| CDY57109 | Canola | plastid | 83.97 | 84.62 |
| VIT_15s0048g00830.t01 | Wine grape | nucleus | 62.6 | 65.34 |
| GSMUA_Achr5P11330_001 | Banana | plastid | 58.78 | 63.9 |
| KRH40590 | Soybean | plastid | 54.96 | 62.07 |
| KRH00577 | Soybean | plastid | 55.34 | 61.97 |
| AT4G00220.1 | Thale cress | plastid | 53.82 | 61.84 |
| GSMUA_Achr2P11240_001 | Banana | plastid | 55.34 | 61.44 |
| GSMUA_Achr1P02520_001 | Banana | cytosol, nucleus, plastid | 55.73 | 60.33 |
| KRH65254 | Soybean | plastid | 56.49 | 58.96 |
| Zm00001d028413_P001 | Maize | plastid | 58.4 | 58.85 |
| Zm00001d047921_P001 | Maize | plastid | 59.16 | 58.49 |
| KRH76282 | Soybean | plastid | 54.96 | 58.3 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 56.87 | 57.98 |
| HORVU4Hr1G063160.1 | Barley | plastid | 55.73 | 57.03 |
| Os03t0246900-00 | Rice | nucleus | 59.54 | 56.73 |
| EER92557 | Sorghum | nucleus | 59.54 | 56.52 |
| TraesCS4D01G225200.1 | Wheat | nucleus | 55.73 | 56.15 |
| TraesCS4A01G067300.1 | Wheat | nucleus | 56.87 | 56.02 |
| TraesCS4B01G224600.1 | Wheat | plastid | 55.34 | 55.34 |
| Os10t0162600-00 | Rice | nucleus | 53.44 | 52.04 |
| KXG38649 | Sorghum | plastid | 51.15 | 51.54 |
| Zm00001d030364_P001 | Maize | plastid | 47.33 | 50.61 |
| AT2G45410.1 | Thale cress | cytosol, nucleus, plastid | 36.26 | 49.74 |
| AT4G00210.1 | Thale cress | nucleus | 37.4 | 44.55 |
| AT5G06080.1 | Thale cress | mitochondrion, nucleus | 28.63 | 42.37 |
| AT2G31310.1 | Thale cress | nucleus | 29.77 | 41.49 |
| AT3G26620.1 | Thale cress | mitochondrion | 18.32 | 39.67 |
| AT3G26660.1 | Thale cress | mitochondrion | 18.32 | 39.67 |
| AT3G58190.1 | Thale cress | plastid | 32.06 | 38.53 |
| AT2G42430.1 | Thale cress | plastid | 34.73 | 37.14 |
| GSMUA_Achr4P28810_001 | Banana | nucleus | 41.22 | 36.61 |
| AT3G11090.1 | Thale cress | mitochondrion | 21.76 | 34.55 |
| AT3G03760.1 | Thale cress | nucleus, plastid | 35.5 | 34.07 |
| AT2G42440.1 | Thale cress | mitochondrion, nucleus | 30.53 | 32.79 |
Protein Annotations
| MapMan:15.5.24 | EntrezGene:819150 | UniProt:A0A178VVX7 | ProteinID:AAB82622.2 | EMBL:AB473853 | ProteinID:AEC10551.1 |
| EMBL:AF447891 | ArrayExpress:AT2G45420 | EnsemblPlantsGene:AT2G45420 | RefSeq:AT2G45420 | TAIR:AT2G45420 | RefSeq:AT2G45420-TAIR-G |
| EnsemblPlants:AT2G45420.1 | TAIR:AT2G45420.1 | Unigene:At.21365 | EMBL:BT025716 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009791 |
| GO:GO:0009987 | GO:GO:0010089 | GO:GO:0010311 | GO:GO:0045893 | InterPro:IPR004883 | Symbol:LBD18 |
| InterPro:LOB | InterPro:LOB_18/20 | RefSeq:NP_850436.1 | UniProt:O22131 | ProteinID:OAP09984.1 | PFAM:PF03195 |
| PIRSF:PIRSF038127 | PO:PO:0000084 | PO:PO:0000290 | PFscan:PS50891 | PANTHER:PTHR31529 | PANTHER:PTHR31529:SF3 |
| UniParc:UPI000012E246 | SEG:seg | : | : | : | : |
Description
LBD18LBD18 [Source:UniProtKB/TrEMBL;Acc:A0A178VVX7]
Coordinates
chr2:+:18718348..18720729
Molecular Weight (calculated)
27220.1 Da
IEP (calculated)
8.085
GRAVY (calculated)
-0.173
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGGNTITA VGGGGGGCGG GGSSGGGGSS GGGGGGPCGA CKFLRRKCVP GCIFAPYFDS EQGSAYFAAV HKVFGASNVS KLLLHIPVHR RSDAVVTICY
101: EAQARIRDPI YGCVAHIFAL QQQVVNLQAE VSYLQAHLAS LELPQPQTRP QPMPQPQPLF FTPPPPLAIT DLPASVSPLP STYDLASIFD QTTSSSAWAT
201: QQRRFIDPRH QYGVSSSSSS VAVGLGGENS HDLQALAHEL LHRQGSPPPA ATDHSPSRTM SR
101: EAQARIRDPI YGCVAHIFAL QQQVVNLQAE VSYLQAHLAS LELPQPQTRP QPMPQPQPLF FTPPPPLAIT DLPASVSPLP STYDLASIFD QTTSSSAWAT
201: QQRRFIDPRH QYGVSSSSSS VAVGLGGENS HDLQALAHEL LHRQGSPPPA ATDHSPSRTM SR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.