Factsheet for Os03t0246900-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028413_P001	Maize	plastid	78.91	83.46
Zm00001d047921_P001	Maize	plastid	80.0	83.02
EER92557	Sorghum	nucleus	81.82	81.52
HORVU4Hr1G063160.1	Barley	plastid	74.18	79.69
TraesCS4D01G225200.1	Wheat	nucleus	75.27	79.62
TraesCS4A01G067300.1	Wheat	nucleus	76.36	78.95
TraesCS4B01G224600.1	Wheat	plastid	74.55	78.24
PGSC0003DMT400033253	Potato	plastid	38.55	76.26
VIT_15s0048g00830.t01	Wine grape	nucleus	62.18	68.13
Os10t0162600-00	Rice	nucleus	61.09	62.45
KRH65254	Soybean	plastid	56.36	61.75
KRH00577	Soybean	plastid	52.36	61.54
CDY18932	Canola	plastid	56.0	61.35
Bra004910.1-P	Field mustard	plastid	56.36	61.26
KRH76282	Soybean	plastid	54.91	61.13
Solyc01g091420.1.1	Tomato	plastid	60.0	60.89
Bra008514.1-P	Field mustard	cytosol, nucleus, plastid	49.09	60.27
CDY54923	Canola	cytosol, nucleus, plastid	49.09	60.27
CDY57109	Canola	plastid	56.73	60.0
CDY69735	Canola	cytosol, nucleus, plastid	48.73	59.82
AT4G00220.1	Thale cress	plastid	49.45	59.65
AT2G45420.1	Thale cress	plastid	56.73	59.54
Bra040311.1-P	Field mustard	nucleus	56.0	59.46
Bra037323.1-P	Field mustard	plastid	48.36	59.38
CDY07236	Canola	plastid	48.36	59.38
CDY68635	Canola	nucleus	55.64	59.07
KRH40590	Soybean	plastid	49.45	58.62
Os02t0820500-01	Rice	plastid	34.91	44.44
Os03t0149000-01	Rice	plastid	28.73	42.7
Os08t0563400-00	Rice	mitochondrion	30.91	39.53
Os03t0149100-01	Rice	mitochondrion	36.36	38.61
GSMUA_Achr4P28810_001	Banana	nucleus	41.09	38.31
Os01t0772100-01	Rice	mitochondrion	30.18	33.88
Os08t0517100-01	Rice	cytosol, nucleus, plastid	10.18	29.47

Protein Annotations

EnsemblPlants:Os03t0246900-00	EnsemblPlantsGene:Os03g0246900	EntrezGene:4332242	InterPro:IPR004883	InterPro:LOB	InterPro:LOB_18/20
PANTHER:PTHR31529	PANTHER:PTHR31529:SF3	PFAM:PF03195	PFscan:PS50891	PIRSF:PIRSF038127	ProteinID:ABF94951.1
ProteinID:BAF11460.1	ProteinID:BAS83252.1	ProteinID:EEE58693.1	RefSeq:XP_015629413.1	SEG:seg	UniParc:UPI0000DB4CD6
UniProt:Q10P52	MapMan:15.5.24	:	:	:	:

Description

Similar to LOB domain protein 16. (Os03t0246900-00)

Coordinates

chr3:-:7767062..7768701

Molecular Weight (calculated)

28254.4 Da

IEP (calculated)

8.188

GRAVY (calculated)

-0.321

Length

275 amino acids

Sequence
(BLAST)

001: MSSGGGASSA LGGGGGGGGS GGGGGGPSGG GGGGGGPCGA CKFLRRKCVS GCIFAPYFDS EQGAAHFAAV HKVFGASNVS KLLLQIPAHK RPDAVVTICY
101: EAQARLRDPV YGCVAHIFAL QQQVVNLQAE LTYLQAHLAT LELPSPPPLM PAPPQMPMPA PFSISDLPSS TSVPTTVDLS ALFDPPPQPQ WASPLQQQQH
201: HHHQHHHHQQ QQHQLRQPSY ATLARAPSGM TAAAESSGGG GGGGGGDLQA LARELLDRHR SAVKLEQPPP PHSRS

Best Arabidopsis Sequence Match ( AT4G00220.1 )
(BLAST)

001: MSSSGNPSSS SGGGGGPCGA CKFLRRKCVA GCIFAPYFDS EQGAAHFAAV HKVFGASNVS KLLHHVPEHK RPDAVVSICF EAQARLRDPI YGCVSHIVSL
101: QQQVVSLQTE LSYLQAHLAT LELPQPQPPQ VPVSSSGSLQ ALSITDLPTI SPSVYDLSSI FEPVMSSTWA MQQQPRPSDH LFGVPSSSNM GGGGELQALA
201: REFIHGGQMP AQPSPGTSGS ASSVIKRE

Arabidopsis Description

LBD30LOB domain-containing protein 30 [Source:UniProtKB/Swiss-Prot;Acc:O81323]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.