Factsheet for Bra008514.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra037322.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00220.1	Bra037322.1-P	AT4G00210.1	22822207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY54923	Canola	cytosol, nucleus, plastid	99.55	99.55
CDY69735	Canola	cytosol, nucleus, plastid	99.11	99.11
Bra037323.1-P	Field mustard	plastid	87.5	87.5
AT4G00220.1	Thale cress	plastid	85.27	83.77
PGSC0003DMT400033253	Potato	plastid	37.95	61.15
GSMUA_Achr5P11330_001	Banana	plastid	60.27	56.02
VIT_15s0048g00830.t01	Wine grape	nucleus	62.5	55.78
GSMUA_Achr2P11240_001	Banana	plastid	58.04	55.08
Bra004910.1-P	Field mustard	plastid	59.38	52.57
Bra040311.1-P	Field mustard	nucleus	59.82	51.74
GSMUA_Achr1P02520_001	Banana	cytosol, nucleus, plastid	55.8	51.65
Zm00001d028413_P001	Maize	plastid	59.38	51.15
Bra001087.1-P	Field mustard	plastid	27.23	50.83
HORVU4Hr1G063160.1	Barley	plastid	58.04	50.78
Solyc01g091420.1.1	Tomato	plastid	61.16	50.55
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	57.14	49.81
TraesCS4B01G224600.1	Wheat	plastid	58.04	49.62
TraesCS4D01G225200.1	Wheat	nucleus	57.59	49.62
Os03t0246900-00	Rice	nucleus	60.27	49.09
TraesCS4A01G067300.1	Wheat	nucleus	58.04	48.87
Zm00001d047921_P001	Maize	plastid	57.59	48.68
EER92557	Sorghum	nucleus	58.48	47.46
KXG38649	Sorghum	plastid	54.46	46.92
Zm00001d030364_P001	Maize	plastid	50.89	46.53
Os10t0162600-00	Rice	nucleus	55.36	46.1
Bra040312.1-P	Field mustard	cytosol, nucleus, plastid	32.59	43.45
Bra004908.1-P	Field mustard	cytosol, nucleus, plastid	35.71	42.55
Bra037322.1-P	Field mustard	nucleus	41.52	41.89
Bra018260.1-P	Field mustard	nucleus	34.38	39.9
Bra009161.1-P	Field mustard	nucleus	30.8	37.7
Bra025217.1-P	Field mustard	cytosol	16.52	34.58
Bra014581.1-P	Field mustard	mitochondrion, nucleus	33.48	34.25
Bra021737.1-P	Field mustard	cytosol	35.71	33.47
Bra036436.1-P	Field mustard	plastid	41.07	33.45
Bra000257.1-P	Field mustard	nucleus	35.27	33.19
GSMUA_Achr4P28810_001	Banana	nucleus	42.86	32.54
Bra007385.1-P	Field mustard	plastid	32.59	32.44
Bra004693.1-P	Field mustard	plastid	34.82	31.97
Bra034867.1-P	Field mustard	plastid	24.11	31.4
Bra016877.1-P	Field mustard	nucleus	34.38	31.3
Bra016876.1-P	Field mustard	nucleus	32.59	27.65
Bra032938.1-P	Field mustard	nucleus	20.09	15.31

Protein Annotations

EnsemblPlants:Bra008514.1	EnsemblPlants:Bra008514.1-P	EnsemblPlantsGene:Bra008514	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31529
PANTHER:PTHR31529:SF3	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI0002546E34	UniProt:M4CWB7
MapMan:15.5.24	:	:	:	:	:

Description

AT4G00220 (E=2e-080) LBD30, JLO | JLO (JAGGED LATERAL ORGANS)

Coordinates

chrA02:+:16097898..16100589

Molecular Weight (calculated)

23734.2 Da

IEP (calculated)

7.045

GRAVY (calculated)

-0.164

Length

224 amino acids

Sequence
(BLAST)

001: MSSSGSPSSS GGGGPCGACK FLRRKCVPGC IFAPYFDSDQ GAAHFAAVHK VFGASNVSKL LHHIPEHKRA DAVVSICFEA QSRLRDPIYG CVSHIVSLQQ
101: QVVSLQNELS YVQAHLATLE LPQPPPATVT SSGSLPPLSI SDLPTITPSM YDLSPIFEPM SSTWPMQQQP RPSDHLFGVS QSSSIGGGGE FQAIAREFLH
201: GGQMSAHQPP PETGGSAPTV IKRE

Best Arabidopsis Sequence Match ( AT4G00220.1 )
(BLAST)

001: MSSSGNPSSS SGGGGGPCGA CKFLRRKCVA GCIFAPYFDS EQGAAHFAAV HKVFGASNVS KLLHHVPEHK RPDAVVSICF EAQARLRDPI YGCVSHIVSL
101: QQQVVSLQTE LSYLQAHLAT LELPQPQPPQ VPVSSSGSLQ ALSITDLPTI SPSVYDLSSI FEPVMSSTWA MQQQPRPSDH LFGVPSSSNM GGGGELQALA
201: REFIHGGQMP AQPSPGTSGS ASSVIKRE

Arabidopsis Description

LBD30LOB domain-containing protein 30 [Source:UniProtKB/Swiss-Prot;Acc:O81323]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.