Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- cytosol 1
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G00220.1 | CDY07237 | AT4G00210.1 | 22822207 |
| AT4G00220.1 | CDY67746 | AT4G00210.1 | 22822207 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008514.1-P | Field mustard | cytosol, nucleus, plastid | 99.55 | 99.55 |
| CDY69735 | Canola | cytosol, nucleus, plastid | 98.66 | 98.66 |
| CDY07236 | Canola | plastid | 87.05 | 87.05 |
| AT4G00220.1 | Thale cress | plastid | 84.82 | 83.33 |
| CDY35378 | Canola | cytosol, nucleus, plastid | 30.8 | 66.99 |
| PGSC0003DMT400033253 | Potato | plastid | 37.95 | 61.15 |
| GSMUA_Achr5P11330_001 | Banana | plastid | 60.27 | 56.02 |
| VIT_15s0048g00830.t01 | Wine grape | nucleus | 62.5 | 55.78 |
| GSMUA_Achr2P11240_001 | Banana | plastid | 58.04 | 55.08 |
| CDY18932 | Canola | plastid | 59.38 | 52.99 |
| GSMUA_Achr1P02520_001 | Banana | cytosol, nucleus, plastid | 55.8 | 51.65 |
| CDY68635 | Canola | nucleus | 59.38 | 51.35 |
| CDY57109 | Canola | plastid | 59.38 | 51.15 |
| HORVU4Hr1G063160.1 | Barley | plastid | 58.04 | 50.78 |
| Zm00001d028413_P001 | Maize | plastid | 58.93 | 50.77 |
| Solyc01g091420.1.1 | Tomato | plastid | 61.16 | 50.55 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 57.14 | 49.81 |
| TraesCS4D01G225200.1 | Wheat | nucleus | 57.59 | 49.62 |
| TraesCS4B01G224600.1 | Wheat | plastid | 57.59 | 49.24 |
| Os03t0246900-00 | Rice | nucleus | 60.27 | 49.09 |
| TraesCS4A01G067300.1 | Wheat | nucleus | 58.04 | 48.87 |
| Zm00001d047921_P001 | Maize | plastid | 57.59 | 48.68 |
| EER92557 | Sorghum | nucleus | 58.48 | 47.46 |
| KXG38649 | Sorghum | plastid | 54.46 | 46.92 |
| Zm00001d030364_P001 | Maize | plastid | 50.89 | 46.53 |
| Os10t0162600-00 | Rice | nucleus | 55.36 | 46.1 |
| CDY15375 | Canola | nucleus | 35.71 | 44.44 |
| CDY07237 | Canola | nucleus | 37.95 | 44.04 |
| CDX75748 | Canola | cytosol, mitochondrion, nucleus | 23.21 | 43.33 |
| CDY68561 | Canola | cytosol, nucleus, plastid | 36.16 | 43.09 |
| CDY10793 | Canola | nucleus | 34.38 | 42.78 |
| CDY24760 | Canola | nucleus | 33.93 | 42.22 |
| CDX74738 | Canola | cytosol, nucleus, plastid | 35.27 | 42.02 |
| CDY67746 | Canola | nucleus | 41.52 | 41.89 |
| CDX83633 | Canola | cytosol, mitochondrion, nucleus, plastid | 21.88 | 41.88 |
| CDY57108 | Canola | mitochondrion | 33.04 | 41.57 |
| CDY37038 | Canola | mitochondrion | 32.59 | 41.01 |
| CDX82498 | Canola | cytosol, nucleus, plastid | 21.88 | 40.5 |
| CDY13647 | Canola | cytosol, mitochondrion, nucleus, plastid | 21.88 | 40.5 |
| CDY28537 | Canola | mitochondrion | 21.43 | 39.67 |
| CDY48982 | Canola | mitochondrion | 20.98 | 38.84 |
| CDY60434 | Canola | nucleus | 31.25 | 38.25 |
| CDX98901 | Canola | nucleus | 30.8 | 37.7 |
| CDY14832 | Canola | mitochondrion, nucleus | 33.48 | 37.69 |
| CDY00547 | Canola | mitochondrion, nucleus | 33.48 | 34.56 |
| CDX92049 | Canola | plastid | 40.62 | 34.08 |
| CDX71962 | Canola | plastid | 33.48 | 33.94 |
| CDX88974 | Canola | mitochondrion, nucleus | 33.04 | 33.79 |
| CDX74209 | Canola | plastid | 41.07 | 33.7 |
| CDY19098 | Canola | cytosol | 35.71 | 33.47 |
| CDY06048 | Canola | plastid | 33.48 | 33.33 |
| CDY29956 | Canola | plastid | 40.62 | 33.09 |
| GSMUA_Achr4P28810_001 | Banana | nucleus | 42.86 | 32.54 |
| CDY22562 | Canola | nucleus | 34.38 | 32.35 |
| CDY00994 | Canola | plastid | 24.11 | 31.58 |
| CDY64515 | Canola | nucleus, plastid | 34.38 | 31.56 |
| CDY08551 | Canola | plastid | 24.11 | 31.4 |
| CDY14831 | Canola | nucleus | 34.38 | 31.3 |
| CDY47969 | Canola | nucleus | 34.38 | 31.3 |
| CDY70198 | Canola | nucleus | 33.93 | 31.15 |
| CDY47970 | Canola | nucleus | 33.04 | 28.03 |
Protein Annotations
| EnsemblPlants:CDY54923 | EnsemblPlantsGene:GSBRNA2T00014820001 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31529 | PANTHER:PTHR31529:SF3 |
| PFAM:PF03195 | PFscan:PS50891 | ProteinID:CDY54923 | ProteinID:CDY54923.1 | SEG:seg | UniParc:UPI0004EE2E64 |
| UniProt:A0A078J022 | MapMan:15.5.24 | : | : | : | : |
Description
BnaAnng13580DBnaAnng13580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J022]
Coordinates
chrLK033361:+:95..2915
Molecular Weight (calculated)
23662.1 Da
IEP (calculated)
7.290
GRAVY (calculated)
-0.150
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSGSPSSS GGGGPCGACK FLRRKCVPGC IFAPYFDSDQ GAAHFAAVHK VFGASNVSKL LHHIPEHKRA DAVVSICFEA QSRLRDPIYG CVSHIVSLQQ
101: QVVSLQNELS YVQAHLATLE LPQPPPATVT SSGSLPPLSI SDLPTITPSM YDLSPIFEPM SSTWPMQQQP RPSDHLFGVS QSSSIGGGGG FQAIAREFLH
201: GGQMSAHQPP PETGGSAPTV IKRE
101: QVVSLQNELS YVQAHLATLE LPQPPPATVT SSGSLPPLSI SDLPTITPSM YDLSPIFEPM SSTWPMQQQP RPSDHLFGVS QSSSIGGGGG FQAIAREFLH
201: GGQMSAHQPP PETGGSAPTV IKRE
001: MSSSGNPSSS SGGGGGPCGA CKFLRRKCVA GCIFAPYFDS EQGAAHFAAV HKVFGASNVS KLLHHVPEHK RPDAVVSICF EAQARLRDPI YGCVSHIVSL
101: QQQVVSLQTE LSYLQAHLAT LELPQPQPPQ VPVSSSGSLQ ALSITDLPTI SPSVYDLSSI FEPVMSSTWA MQQQPRPSDH LFGVPSSSNM GGGGELQALA
201: REFIHGGQMP AQPSPGTSGS ASSVIKRE
101: QQQVVSLQTE LSYLQAHLAT LELPQPQPPQ VPVSSSGSLQ ALSITDLPTI SPSVYDLSSI FEPVMSSTWA MQQQPRPSDH LFGVPSSSNM GGGGELQALA
201: REFIHGGQMP AQPSPGTSGS ASSVIKRE
Arabidopsis Description
LBD30LOB domain-containing protein 30 [Source:UniProtKB/Swiss-Prot;Acc:O81323]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.