Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74738 | Canola | cytosol, nucleus, plastid | 94.15 | 94.15 |
| AT2G45410.1 | Thale cress | cytosol, nucleus, plastid | 81.38 | 80.1 |
| CDY57108 | Canola | mitochondrion | 72.34 | 76.4 |
| CDY37038 | Canola | mitochondrion | 72.34 | 76.4 |
| CDY35378 | Canola | cytosol, nucleus, plastid | 33.51 | 61.16 |
| VIT_15s0048g00840.t01 | Wine grape | cytosol, nucleus, plastid | 57.98 | 56.19 |
| HORVU0Hr1G020290.1 | Barley | cytosol, plastid | 32.98 | 49.6 |
| KRH76281 | Soybean | cytosol, nucleus, plastid | 52.13 | 49.49 |
| KRH65255 | Soybean | cytosol, nucleus, plastid | 55.32 | 49.06 |
| Solyc01g091400.2.1 | Tomato | plastid | 42.02 | 47.31 |
| PGSC0003DMT400033221 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 31.38 | 44.36 |
| CDY07237 | Canola | nucleus | 45.21 | 44.04 |
| CDY67746 | Canola | nucleus | 50.0 | 42.34 |
| CDY28537 | Canola | mitochondrion | 26.6 | 41.32 |
| CDX75748 | Canola | cytosol, mitochondrion, nucleus | 26.06 | 40.83 |
| CDY48982 | Canola | mitochondrion | 26.06 | 40.5 |
| CDX83633 | Canola | cytosol, mitochondrion, nucleus, plastid | 25.0 | 40.17 |
| CDY13647 | Canola | cytosol, mitochondrion, nucleus, plastid | 25.53 | 39.67 |
| CDX82498 | Canola | cytosol, nucleus, plastid | 25.53 | 39.67 |
| CDY07236 | Canola | plastid | 45.21 | 37.95 |
| CDY15375 | Canola | nucleus | 36.17 | 37.78 |
| CDY60434 | Canola | nucleus | 36.7 | 37.7 |
| CDX98901 | Canola | nucleus | 36.7 | 37.7 |
| CDY10793 | Canola | nucleus | 35.64 | 37.22 |
| CDY24760 | Canola | nucleus | 35.11 | 36.67 |
| CDY69735 | Canola | cytosol, nucleus, plastid | 43.62 | 36.61 |
| CDY54923 | Canola | cytosol, nucleus, plastid | 43.09 | 36.16 |
| CDY14832 | Canola | mitochondrion, nucleus | 37.77 | 35.68 |
| TraesCS7A01G228900.1 | Wheat | cytosol, nucleus, plastid | 43.09 | 35.37 |
| HORVU7Hr1G046690.1 | Barley | cytosol, nucleus, plastid | 42.55 | 35.09 |
| TraesCS7D01G229900.1 | Wheat | cytosol, nucleus, plastid | 42.55 | 34.93 |
| CDY18932 | Canola | plastid | 45.21 | 33.86 |
| TraesCS7B01G195100.1 | Wheat | cytosol, nucleus, plastid | 40.96 | 33.62 |
| CDY57109 | Canola | plastid | 45.74 | 33.08 |
| CDY68635 | Canola | nucleus | 45.21 | 32.82 |
| CDX88974 | Canola | mitochondrion, nucleus | 37.77 | 32.42 |
| CDY00547 | Canola | mitochondrion, nucleus | 37.23 | 32.26 |
| CDX71962 | Canola | plastid | 37.23 | 31.67 |
| CDY06048 | Canola | plastid | 37.23 | 31.11 |
| CDY22562 | Canola | nucleus | 39.36 | 31.09 |
| CDY00994 | Canola | plastid | 28.19 | 30.99 |
| CDY08551 | Canola | plastid | 28.19 | 30.81 |
| CDY64515 | Canola | nucleus, plastid | 39.89 | 30.74 |
| CDY47969 | Canola | nucleus | 39.89 | 30.49 |
| CDY14831 | Canola | nucleus | 39.89 | 30.49 |
| CDY70198 | Canola | nucleus | 39.36 | 30.33 |
| CDY19098 | Canola | cytosol | 38.3 | 30.13 |
| CDX92049 | Canola | plastid | 38.83 | 27.34 |
| CDY47970 | Canola | nucleus | 38.3 | 27.27 |
| CDX74209 | Canola | plastid | 39.36 | 27.11 |
| CDY29956 | Canola | plastid | 39.36 | 26.91 |
Protein Annotations
| EnsemblPlants:CDY68561 | EnsemblPlantsGene:GSBRNA2T00075455001 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31529 |
| PANTHER:PTHR31529:SF7 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:CDY68561 | ProteinID:CDY68561.1 | SEG:seg |
| UniParc:UPI0004EEB2B2 | UniProt:A0A078JSE0 | MapMan:15.5.24 | : | : | : |
Description
BnaCnng59550DBnaCnng59550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JSE0]
Coordinates
chrLK037558:+:406..1063
Molecular Weight (calculated)
20727.7 Da
IEP (calculated)
6.499
GRAVY (calculated)
-0.240
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MTGNLNGGGR GGEGPCGACK FLRRKCVSGC VFAPYFDAEQ GTATFAAVHK VFGASNASKM LLRLPLNKRH DAVSTLCYEA LARLSDPVYG SVGHLFSLQH
101: QVMNLQAEIA HVQARLSTFQ RFSVIPPQQM QQPPHNNEYP VEQTNLDFAW EEEQLSLAGN EDGEFQELAM QFVSKYLPEV KLPACTFS
101: QVMNLQAEIA HVQARLSTFQ RFSVIPPQQM QQPPHNNEYP VEQTNLDFAW EEEQLSLAGN EDGEFQELAM QFVSKYLPEV KLPACTFS
001: MMTGNLNGGG RGGEGPCGAC KFLRRKCVKG CVFAPYFDAE QGTARFAAVH KVFGASNASK MLLRLPLHKR LDAVVTLCYE AMARIRDPVY GSVGHLFSLQ
101: HQVMNLQAEL AHVQARLSTI QRFPLQSPQQ MQPPSFDPAH NNEYAMEPSN LDSVWGEEHL LQDGTGDGDF QELASQFVSR YLPAVKLPAC T
101: HQVMNLQAEL AHVQARLSTI QRFPLQSPQQ MQPPSFDPAH NNEYAMEPSN LDSVWGEEHL LQDGTGDGDF QELASQFVSR YLPAVKLPAC T
Arabidopsis Description
LBD19LBD19 [Source:UniProtKB/TrEMBL;Acc:A0A178VSY1]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.