Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400033221 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 68.26 | 85.71 |
| HORVU0Hr1G020290.1 | Barley | cytosol, plastid | 38.92 | 52.0 |
| Bra040312.1-P | Field mustard | cytosol, nucleus, plastid | 49.7 | 49.4 |
| KRH76281 | Soybean | cytosol, nucleus, plastid | 56.29 | 47.47 |
| CDY57108 | Canola | mitochondrion | 50.3 | 47.19 |
| CDY37038 | Canola | mitochondrion | 49.7 | 46.63 |
| VIT_15s0048g00840.t01 | Wine grape | cytosol, nucleus, plastid | 53.89 | 46.39 |
| CDY07237 | Canola | nucleus | 50.3 | 43.52 |
| AT2G45410.1 | Thale cress | cytosol, nucleus, plastid | 49.7 | 43.46 |
| CDX74738 | Canola | cytosol, nucleus, plastid | 48.5 | 43.09 |
| Bra004908.1-P | Field mustard | cytosol, nucleus, plastid | 48.5 | 43.09 |
| CDY68561 | Canola | cytosol, nucleus, plastid | 47.31 | 42.02 |
| KRH65255 | Soybean | cytosol, nucleus, plastid | 53.29 | 41.98 |
| Solyc01g109240.1.1 | Tomato | mitochondrion | 29.94 | 41.32 |
| CDY67746 | Canola | nucleus | 53.29 | 40.09 |
| Bra037322.1-P | Field mustard | nucleus | 53.29 | 40.09 |
| AT4G00210.1 | Thale cress | nucleus | 52.1 | 39.55 |
| Solyc06g083930.1.1 | Tomato | nucleus | 41.92 | 35.71 |
| Solyc03g095940.1.1 | Tomato | plastid | 35.33 | 34.71 |
| Solyc01g091420.1.1 | Tomato | plastid | 55.69 | 34.32 |
| Solyc06g064540.1.1 | Tomato | mitochondrion, plastid | 29.94 | 33.78 |
| TraesCS7A01G228900.1 | Wheat | cytosol, nucleus, plastid | 44.91 | 32.75 |
| TraesCS7D01G229900.1 | Wheat | cytosol, nucleus, plastid | 44.91 | 32.75 |
| Solyc09g066260.2.1 | Tomato | nucleus | 44.91 | 32.61 |
| HORVU7Hr1G046690.1 | Barley | cytosol, nucleus, plastid | 44.31 | 32.46 |
| TraesCS7B01G195100.1 | Wheat | cytosol, nucleus, plastid | 44.31 | 32.31 |
| Solyc01g098220.1.1 | Tomato | nucleus | 43.11 | 29.88 |
| Solyc09g066270.2.1 | Tomato | nucleus | 42.52 | 29.1 |
Protein Annotations
| EnsemblPlants:Solyc01g091400.2.1 | EnsemblPlantsGene:Solyc01g091400.2 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31529 | PANTHER:PTHR31529:SF12 |
| PFAM:PF03195 | PFscan:PS50891 | SEG:seg | UniParc:UPI00027681E4 | UniProt:K4AZ80 | MapMan:15.5.24 |
Description
No Description!
Coordinates
chr1:-:85032884..85035190
Molecular Weight (calculated)
18208.1 Da
IEP (calculated)
7.477
GRAVY (calculated)
0.105
Length
167 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNGTGPCGA CKFLRRKCVK GCIFAPYFDS EQGMAHFAVV HKVFGASNTS KLLLTIPPNK RFETVVTLYF EALARVRDPV YGCVGHIISL QQQAVTLQAE
101: LAYVQARISM LHHHHHHLPM PPPTPLQADL AAACCSNVSS SVCTSGDPLI DITDLCNVLD QQLDNSM
101: LAYVQARISM LHHHHHHLPM PPPTPLQADL AAACCSNVSS SVCTSGDPLI DITDLCNVLD QQLDNSM
001: MSGSTTGCGG PCGACKFLRR KCVADCVFAP YFDSVEGTSH FTAVHKVFGA SNASKLLMMI PASRRLDAVV TLTYEALARL RDPVYGCVGH IFALQHQVMN
101: LQAELAYVQT QLSTLQGLPP PNSQNNSRTE AASSSNVPLI SSVDSKDNMS SSSSHIPCMS QQQEQEQPKE AIEVPTESVD LSTFFGLENP VDEDGDLNAL
201: AREFFTKYLT GGKYRPSSLI
101: LQAELAYVQT QLSTLQGLPP PNSQNNSRTE AASSSNVPLI SSVDSKDNMS SSSSHIPCMS QQQEQEQPKE AIEVPTESVD LSTFFGLENP VDEDGDLNAL
201: AREFFTKYLT GGKYRPSSLI
Arabidopsis Description
LBD31LOB domain-containing protein 31 [Source:UniProtKB/Swiss-Prot;Acc:O81322]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.