Factsheet for Solyc01g098220.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057829	Potato	nucleus	93.78	93.78
VIT_08s0056g01650.t01	Wine grape	cytosol, nucleus, plastid	62.24	63.03
Bra001087.1-P	Field mustard	plastid	27.8	55.83
KRH32932	Soybean	cytosol, mitochondrion, nucleus	53.53	53.97
KRG94981	Soybean	nucleus	52.7	53.14
KRH71749	Soybean	cytosol, mitochondrion, nucleus	52.28	52.94
CDX92049	Canola	plastid	53.11	47.94
AT3G03760.1	Thale cress	nucleus, plastid	53.94	47.62
Bra036436.1-P	Field mustard	plastid	52.7	46.18
CDX74209	Canola	plastid	52.28	46.15
CDY29956	Canola	plastid	52.28	45.82
Solyc01g091400.2.1	Tomato	plastid	29.88	43.11
Solyc06g083930.1.1	Tomato	nucleus	33.61	41.33
Solyc01g109240.1.1	Tomato	mitochondrion	19.5	38.84
Solyc09g066260.2.1	Tomato	nucleus	35.68	37.39
Solyc09g066270.2.1	Tomato	nucleus	34.44	34.02
Solyc06g064540.1.1	Tomato	mitochondrion, plastid	19.5	31.76
Solyc03g095940.1.1	Tomato	plastid	21.99	31.18
Solyc01g091420.1.1	Tomato	plastid	33.61	29.89

Protein Annotations

MapMan:15.5.24	ncoils:Coil	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009605	GO:GO:0009607	GO:GO:0009719	GO:GO:0009753	GO:GO:0009867	GO:GO:0009987
GO:GO:1900150	InterPro:IPR004883	UniProt:K4B0K9	InterPro:LOB	PFAM:PF03195	PFscan:PS50891
PANTHER:PTHR31529	PANTHER:PTHR31529:SF12	EnsemblPlantsGene:Solyc01g098220.1	EnsemblPlants:Solyc01g098220.1.1	UniParc:UPI00027685CE	SEG:seg

Description

LOB domain-containing protein 20 [Source:Projected from Arabidopsis thaliana (AT3G03760) UniProtKB/Swiss-Prot;Acc:Q9SRV3]

Coordinates

chr1:-:88803777..88805153

Molecular Weight (calculated)

26460.8 Da

IEP (calculated)

6.427

GRAVY (calculated)

-0.380

Length

241 amino acids

Sequence
(BLAST)

001: MDERSSDGAD RRKGPGKHVS GAVEQQASGV LPASTAPCGA CKFLRRKCIN GCVFAPYFGS DQGAARFAAV HKVFGASNVS KLLLHIPANR RQDAVVTITY
101: EAQARLSDPV FGCVSTILAL QQQVASLQSE LAIVQTQVMN SRYAMANAYH NISQEQHIAI LQPSYSNNSS ISNNNINLIN NFNNFTTNNI FDHQLHGSVT
201: CTANNSPSFD PIHQLREEEE EEEEEESHNP LAFTNHMFHS L

Best Arabidopsis Sequence Match ( AT3G03760.1 )
(BLAST)

001: MADQQRGHNT SDSRRKSLAG KRTSQQTPTS SLSSGGVSMA AATTGTGTAS PCGACKFLRR KCVSGCIFAP HFGSDQGAAR FAAVHKVFGA SNVSKLLHHI
101: PVNRRHDAVV TISYEAQARL SDPVYGCVST ILALQQQVAS LQAELSVVQS QLINSRVAMA NVMQQQTHHQ QQQQQLVVMQ QPEYSNNSSA STTLAGAAMN
201: SFTMTADAAA VSYDVMAPTN LEHSLQPMPP HQQRRGDYQH EDEEESGADF SVAVGSTAVA SKVIFPAEDF HRR

Arabidopsis Description

LBD20LOB domain-containing protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRV3]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.