Factsheet for Bra040312.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37038	Canola	mitochondrion	99.4	93.82
CDY57108	Canola	mitochondrion	97.02	91.57
Bra004908.1-P	Field mustard	cytosol, nucleus, plastid	81.55	72.87
AT2G45410.1	Thale cress	cytosol, nucleus, plastid	82.14	72.25
VIT_15s0048g00840.t01	Wine grape	cytosol, nucleus, plastid	57.74	50.0
Solyc01g091400.2.1	Tomato	plastid	49.4	49.7
HORVU0Hr1G020290.1	Barley	cytosol, plastid	36.9	49.6
KRH76281	Soybean	cytosol, nucleus, plastid	57.74	48.99
KRH65255	Soybean	cytosol, nucleus, plastid	56.55	44.81
PGSC0003DMT400033221	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	35.12	44.36
Bra001087.1-P	Field mustard	plastid	28.57	40.0
Bra037322.1-P	Field mustard	nucleus	49.4	37.39
Bra025217.1-P	Field mustard	cytosol	23.21	36.45
Bra009161.1-P	Field mustard	nucleus	39.29	36.07
Bra018260.1-P	Field mustard	nucleus	40.48	35.23
TraesCS7A01G228900.1	Wheat	cytosol, nucleus, plastid	46.43	34.06
Bra037323.1-P	Field mustard	plastid	45.24	33.93
Bra004910.1-P	Field mustard	plastid	50.0	33.2
TraesCS7D01G229900.1	Wheat	cytosol, nucleus, plastid	45.24	33.19
HORVU7Hr1G046690.1	Barley	cytosol, nucleus, plastid	44.64	32.89
Bra008514.1-P	Field mustard	cytosol, nucleus, plastid	43.45	32.59
Bra040311.1-P	Field mustard	nucleus	50.0	32.43
TraesCS7B01G195100.1	Wheat	cytosol, nucleus, plastid	44.05	32.31
Bra014581.1-P	Field mustard	mitochondrion, nucleus	40.48	31.05
Bra000257.1-P	Field mustard	nucleus	42.26	29.83
Bra034867.1-P	Field mustard	plastid	30.36	29.65
Bra004693.1-P	Field mustard	plastid	42.26	29.1
Bra007385.1-P	Field mustard	plastid	38.69	28.89
Bra016877.1-P	Field mustard	nucleus	42.26	28.86
Bra021737.1-P	Field mustard	cytosol	39.88	28.03
Bra016876.1-P	Field mustard	nucleus	42.86	27.27
Bra036436.1-P	Field mustard	plastid	41.07	25.09
Bra032938.1-P	Field mustard	nucleus	27.38	15.65

Protein Annotations

EnsemblPlants:Bra040312.1	EnsemblPlants:Bra040312.1-P	EnsemblPlantsGene:Bra040312	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31529	PANTHER:PTHR31529:SF7	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI0002544264
UniProt:M4FGT4	MapMan:15.5.24	:	:	:	:

Description

AT2G45410 (E=5e-064) LBD19 | LBD19 (LOB DOMAIN-CONTAINING PROTEIN 19)

Coordinates

chrA04:-:18539194..18539789

Molecular Weight (calculated)

18605.5 Da

IEP (calculated)

7.892

GRAVY (calculated)

-0.179

Length

168 amino acids

Sequence
(BLAST)

001: MMTTNLNGGG RGGGGEGPCG ACKFLRRKCV SGCVFAPYFD AEQGTASFAA IHKVFGASNT SKMLLRLPLH KRLDAVATLG YEALARVRDP VYGCVGHLFS
101: LQHQVMNLQA EIAHVQARLS MFQRFYLVPP QQMQQPPFDL AYNNEYPMEP TNLDVGWEEE QLPQAVRL

Best Arabidopsis Sequence Match ( AT2G45410.1 )
(BLAST)

001: MMTGNLNGGG RGGEGPCGAC KFLRRKCVKG CVFAPYFDAE QGTARFAAVH KVFGASNASK MLLRLPLHKR LDAVVTLCYE AMARIRDPVY GSVGHLFSLQ
101: HQVMNLQAEL AHVQARLSTI QRFPLQSPQQ MQPPSFDPAH NNEYAMEPSN LDSVWGEEHL LQDGTGDGDF QELASQFVSR YLPAVKLPAC T

Arabidopsis Description

LBD19LBD19 [Source:UniProtKB/TrEMBL;Acc:A0A178VSY1]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.