CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10793	Canola	nucleus	86.67	86.67
CDY24760	Canola	nucleus	86.11	86.11
CDY35378	Canola	cytosol, nucleus, plastid	38.33	66.99
CDY19098	Canola	cytosol	87.78	66.11
CDY14832	Canola	mitochondrion, nucleus	46.67	42.21
CDY37038	Canola	mitochondrion	38.89	39.33
CDY57108	Canola	mitochondrion	38.89	39.33
CDX88974	Canola	mitochondrion, nucleus	47.78	39.27
CDY00547	Canola	mitochondrion, nucleus	47.22	39.17
CDX71962	Canola	plastid	47.78	38.91
CDX83633	Canola	cytosol, mitochondrion, nucleus, plastid	25.0	38.46
CDY60434	Canola	nucleus	38.89	38.25
CDY06048	Canola	plastid	47.78	38.22
CDX98901	Canola	nucleus	38.33	37.7
CDX75748	Canola	cytosol, mitochondrion, nucleus	25.0	37.5
CDY13647	Canola	cytosol, mitochondrion, nucleus, plastid	24.44	36.36
CDX82498	Canola	cytosol, nucleus, plastid	24.44	36.36
CDY68561	Canola	cytosol, nucleus, plastid	37.78	36.17
CDY54923	Canola	cytosol, nucleus, plastid	44.44	35.71
CDY69735	Canola	cytosol, nucleus, plastid	44.44	35.71
CDY07236	Canola	plastid	43.89	35.27
CDY28537	Canola	mitochondrion	23.33	34.71
CDX74738	Canola	cytosol, nucleus, plastid	36.11	34.57
CDY48982	Canola	mitochondrion	22.78	33.88
CDY07237	Canola	nucleus	36.11	33.68
CDY22562	Canola	nucleus	42.78	32.35
CDY47970	Canola	nucleus	47.22	32.2
CDY14831	Canola	nucleus	43.89	32.11
CDY70198	Canola	nucleus	43.33	31.97
CDY64515	Canola	nucleus, plastid	43.33	31.97
CDY47969	Canola	nucleus	43.33	31.71
CDY18932	Canola	plastid	43.89	31.47
CDY68635	Canola	nucleus	43.89	30.5
CDY57109	Canola	plastid	43.89	30.38
CDY00994	Canola	plastid	28.33	29.82
CDY67746	Canola	nucleus	36.67	29.73
CDY08551	Canola	plastid	28.33	29.65
CDX92049	Canola	plastid	40.56	27.34
CDY29956	Canola	plastid	41.67	27.27
CDX74209	Canola	plastid	41.11	27.11

Protein Annotations

EnsemblPlants:CDY15375	EnsemblPlantsGene:GSBRNA2T00085675001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31529
PANTHER:PTHR31529:SF2	PFAM:PF03195	PFscan:PS50891	ProteinID:CDY15375	ProteinID:CDY15375.1	UniParc:UPI0004EEF065
UniProt:A0A078FLR1	MapMan:15.5.24	:	:	:	:

Description

BnaC04g42480DBnaC04g42480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FLR1]

Coordinates

chrLK032054:+:489019..489721

Molecular Weight (calculated)

20304.0 Da

IEP (calculated)

5.914

GRAVY (calculated)

-0.207

Length

180 amino acids

Sequence
(BLAST)

001: MGGLGSPCGA CKFLRRKCVE GCVFAPYFCY EEGSSSFAAI HKVFGASNFS KLISHLPDHD RCDAVRTISY EAQSRLHDPI YGCVSQIFSL QQKVVSLQAQ
101: VVLLREEASR KFPQGDCSEQ GKFLVQDTPQ DLHSWFHQVV SDSKLNQMSD VASTFMDRDE SLCSSNEFIY YQEVMFPWSV

Best Arabidopsis Sequence Match ( AT2G31310.1 )
(BLAST)

001: MGGLGSPCGG CKFLRRKCVE GCVFAPYFCY EEGSSNFAAI HKVFGASNFS KLISHLPDHD RCDAVRTISY EAHSRLHDPI YGCVSQIFSL QQQVVSLQAQ
101: VVLLREEASR RFPQDDPGCN MKQQEKVLAQ QMPQDLHNWF HQGILDSDFD PMSGTTRDNE RSMDHNESPC SSNESLNYYQ EVNFPWSV

Arabidopsis Description

LBD14LOB domain-containing protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.