Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47969 | Canola | nucleus | 97.56 | 97.56 |
| CDY35378 | Canola | cytosol, nucleus, plastid | 38.62 | 92.23 |
| AT2G42430.1 | Thale cress | plastid | 91.06 | 91.43 |
| CDY70198 | Canola | nucleus | 89.43 | 90.16 |
| CDY64515 | Canola | nucleus, plastid | 88.62 | 89.34 |
| CDY22562 | Canola | nucleus | 84.55 | 87.39 |
| KRH19529 | Soybean | plastid | 32.93 | 66.94 |
| VIT_07s0005g03030.t01 | Wine grape | plastid | 50.41 | 63.59 |
| KRH32155 | Soybean | plastid | 50.81 | 58.69 |
| GSMUA_Achr1P01350_001 | Banana | nucleus | 47.15 | 57.71 |
| PGSC0003DMT400025135 | Potato | nucleus | 50.81 | 56.56 |
| Solyc09g066260.2.1 | Tomato | nucleus | 50.41 | 53.91 |
| GSMUA_Achr5P13230_001 | Banana | mitochondrion, plastid | 41.46 | 52.85 |
| EER95498 | Sorghum | cytosol, nucleus, plastid | 35.77 | 52.38 |
| Zm00001d027678_P001 | Maize | cytosol, nucleus, plastid | 35.37 | 52.1 |
| PGSC0003DMT400051680 | Potato | nucleus | 41.06 | 51.79 |
| Solyc06g083930.1.1 | Tomato | nucleus | 41.06 | 51.53 |
| Zm00001d051891_P001 | Maize | plastid | 43.5 | 49.54 |
| Os03t0149000-01 | Rice | plastid | 36.99 | 49.19 |
| HORVU4Hr1G080150.1 | Barley | plastid | 36.59 | 48.91 |
| EES07771 | Sorghum | plastid | 42.68 | 48.84 |
| TraesCS4A01G415300.1 | Wheat | plastid | 36.59 | 48.65 |
| Os02t0820500-01 | Rice | plastid | 42.68 | 48.61 |
| TraesCS6D01G382600.1 | Wheat | plastid | 41.06 | 48.33 |
| TraesCS4D01G312700.1 | Wheat | plastid | 36.18 | 47.59 |
| TraesCS6A01G398400.1 | Wheat | plastid | 39.84 | 47.57 |
| TraesCS4B01G316100.1 | Wheat | plastid | 35.77 | 47.06 |
| HORVU0Hr1G017670.2 | Barley | plastid | 39.84 | 46.67 |
| TraesCS6B01G438700.1 | Wheat | plastid | 39.84 | 46.45 |
| CDY10793 | Canola | nucleus | 33.33 | 45.56 |
| CDY24760 | Canola | nucleus | 33.33 | 45.56 |
| CDX75748 | Canola | cytosol, mitochondrion, nucleus | 21.54 | 44.17 |
| CDY15375 | Canola | nucleus | 32.11 | 43.89 |
| CDX83633 | Canola | cytosol, mitochondrion, nucleus, plastid | 20.33 | 42.73 |
| CDX88974 | Canola | mitochondrion, nucleus | 37.8 | 42.47 |
| CDX82498 | Canola | cytosol, nucleus, plastid | 20.73 | 42.15 |
| CDY00547 | Canola | mitochondrion, nucleus | 36.59 | 41.47 |
| CDY13647 | Canola | cytosol, mitochondrion, nucleus, plastid | 20.33 | 41.32 |
| CDY07237 | Canola | nucleus | 32.11 | 40.93 |
| CDY60434 | Canola | nucleus | 30.08 | 40.44 |
| CDX74738 | Canola | cytosol, nucleus, plastid | 30.49 | 39.89 |
| CDY68561 | Canola | cytosol, nucleus, plastid | 30.49 | 39.89 |
| CDX98901 | Canola | nucleus | 29.67 | 39.89 |
| CDX71962 | Canola | plastid | 35.77 | 39.82 |
| CDY06048 | Canola | plastid | 36.18 | 39.56 |
| CDY57108 | Canola | mitochondrion | 28.46 | 39.33 |
| CDY37038 | Canola | mitochondrion | 28.46 | 39.33 |
| CDY14832 | Canola | mitochondrion, nucleus | 31.71 | 39.2 |
| CDY28537 | Canola | mitochondrion | 19.11 | 38.84 |
| CDY67746 | Canola | nucleus | 34.55 | 38.29 |
| CDY48982 | Canola | mitochondrion | 18.7 | 38.02 |
| CDY07236 | Canola | plastid | 33.74 | 37.05 |
| CDX74209 | Canola | plastid | 39.02 | 35.16 |
| CDY29956 | Canola | plastid | 39.02 | 34.91 |
| CDX92049 | Canola | plastid | 37.8 | 34.83 |
| CDY69735 | Canola | cytosol, nucleus, plastid | 31.71 | 34.82 |
| CDY18932 | Canola | plastid | 35.37 | 34.66 |
| CDY54923 | Canola | cytosol, nucleus, plastid | 31.3 | 34.38 |
| CDY19098 | Canola | cytosol | 33.33 | 34.31 |
| CDY68635 | Canola | nucleus | 35.37 | 33.59 |
| CDY57109 | Canola | plastid | 34.96 | 33.08 |
| CDY00994 | Canola | plastid | 22.36 | 32.16 |
| CDY08551 | Canola | plastid | 22.36 | 31.98 |
| CDY47970 | Canola | nucleus | 31.71 | 29.55 |
Protein Annotations
| EnsemblPlants:CDY14831 | EnsemblPlantsGene:GSBRNA2T00084710001 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31529 | PANTHER:PTHR31529:SF4 |
| PFAM:PF03195 | PFscan:PS50891 | ProteinID:CDY14831 | ProteinID:CDY14831.1 | SEG:seg | UniParc:UPI0004EF4A73 |
| UniProt:A0A078FNU5 | MapMan:15.5.24 | : | : | : | : |
Description
BnaC04g48280DBnaC04g48280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FNU5]
Coordinates
chrLK032047:+:602410..603826
Molecular Weight (calculated)
26657.2 Da
IEP (calculated)
8.084
GRAVY (calculated)
-0.415
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSGNGITT GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ
101: QVAYLQAQVM QMKAQIAGHQ MSAAGDLRNS SESTHQQYMT WQQTTGSPIG NAYSTAYNHH HQPYYGHVNP NNPVSPQNSL EETFSNTSSD VTTTANVRET
201: QQSGGGVYGH GGLGFHEGYP NKKRSVSYCN SDLGELQALA LRMMKN
101: QVAYLQAQVM QMKAQIAGHQ MSAAGDLRNS SESTHQQYMT WQQTTGSPIG NAYSTAYNHH HQPYYGHVNP NNPVSPQNSL EETFSNTSSD VTTTANVRET
201: QQSGGGVYGH GGLGFHEGYP NKKRSVSYCN SDLGELQALA LRMMKN
001: MASSGNGTTA GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN
Arabidopsis Description
LBD16LOB domain-containing protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLB7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.