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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 4
  • plastid 2
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6B01G438700.1 Wheat plastid 96.67 96.21
TraesCS6D01G382600.1 Wheat plastid 90.48 90.91
TraesCS6A01G398400.1 Wheat plastid 88.57 90.29
CDY35378 Canola cytosol, nucleus, plastid 35.24 71.84
Os02t0820500-01 Rice plastid 73.33 71.3
EES07771 Sorghum plastid 70.95 69.3
Zm00001d051891_P001 Maize plastid 70.48 68.52
KRH19529 Soybean plastid 33.81 58.68
VIT_07s0005g03030.t01 Wine grape plastid 47.62 51.28
HORVU0Hr1G020290.1 Barley cytosol, plastid 29.52 49.6
HORVU4Hr1G080150.1 Barley plastid 42.86 48.91
GSMUA_Achr1P01350_001 Banana nucleus 45.71 47.76
GSMUA_Achr5P13230_001 Banana mitochondrion, plastid 43.81 47.67
PGSC0003DMT400025135 Potato nucleus 46.67 44.34
KRH32155 Soybean plastid 44.29 43.66
Solyc06g083930.1.1 Tomato nucleus 39.05 41.84
PGSC0003DMT400051680 Potato nucleus 38.57 41.54
Bra004693.1-P Field mustard plastid 47.14 40.57
CDY64515 Canola nucleus, plastid 46.67 40.16
Solyc09g066260.2.1 Tomato nucleus 43.81 40.0
Bra000257.1-P Field mustard nucleus 45.24 39.92
CDY14831 Canola nucleus 46.67 39.84
CDY70198 Canola nucleus 46.19 39.75
CDY22562 Canola nucleus 44.76 39.5
CDY47969 Canola nucleus 46.19 39.43
AT2G42430.1 Thale cress plastid 45.71 39.18
Bra016877.1-P Field mustard nucleus 45.71 39.02
HORVU4Hr1G000880.4 Barley cytosol, nucleus, plastid 38.57 36.0
HORVU4Hr1G063160.1 Barley plastid 42.86 35.16
HORVU5Hr1G075950.1 Barley cytosol, nucleus 14.29 34.48
HORVU4Hr1G080160.1 Barley plastid 44.29 32.75
HORVU4Hr1G084750.2 Barley cytosol, nucleus 26.67 31.64
HORVU7Hr1G046690.1 Barley cytosol, nucleus, plastid 34.29 31.58
HORVU3Hr1G075370.2 Barley nucleus 33.81 30.47
Protein Annotations
EnsemblPlants:HORVU0Hr1G017670.2EnsemblPlantsGene:HORVU0Hr1G017670InterPro:IPR004883InterPro:LOBncoils:CoilPANTHER:PTHR31529
PANTHER:PTHR31529:SF20PFAM:PF03195PFscan:PS50891SEG:segUniParc:UPI000295200CUniProt:M0XPN3
MapMan:15.5.24:::::
Description
No Description!
Coordinates
chrchrUn:-:92874309..92875556
Molecular Weight (calculated)
21717.0 Da
IEP (calculated)
7.722
GRAVY (calculated)
0.103
Length
210 amino acids
Sequence
(BLAST)
001: MAAAPGGGGG GGVAGVAGSP CGACKFLRRR CVAECVFAPY FSSEQGAARF AAIHKVFGAS NAAKLLAHLP LADRCEAVVT ITYEAQSRLR DPVYGCVAQI
101: FALQQQVAIL QAQLMQARAQ IACGVQSTTS PVSHHQQQPW SQDTSIAALL RQQENVSSFA AGGALLPELM SGDVSMLQQH CGGKVEGGGG GAGDLQYLAQ
201: AMMQSSNYSL
Best Arabidopsis Sequence Match ( AT2G42430.1 )
(BLAST)
001: MASSGNGTTA GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN
Arabidopsis Description
LBD16LOB domain-containing protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLB7]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.