Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G295100.1 | Wheat | nucleus | 95.71 | 96.54 |
| TraesCS3D01G308000.1 | Wheat | mitochondrion | 96.14 | 91.06 |
| Os01t0772100-01 | Rice | mitochondrion | 70.39 | 66.94 |
| EES01535 | Sorghum | plastid | 56.65 | 59.19 |
| Zm00001d043311_P001 | Maize | plastid | 53.22 | 56.11 |
| HORVU0Hr1G020290.1 | Barley | cytosol, plastid | 24.46 | 45.6 |
| HORVU4Hr1G080150.1 | Barley | plastid | 31.33 | 39.67 |
| HORVU5Hr1G075950.1 | Barley | cytosol, nucleus | 13.3 | 35.63 |
| HORVU0Hr1G017670.2 | Barley | plastid | 30.47 | 33.81 |
| HORVU4Hr1G084750.2 | Barley | cytosol, nucleus | 25.32 | 33.33 |
| HORVU4Hr1G000880.4 | Barley | cytosol, nucleus, plastid | 30.9 | 32.0 |
| HORVU4Hr1G063160.1 | Barley | plastid | 34.33 | 31.25 |
| HORVU7Hr1G046690.1 | Barley | cytosol, nucleus, plastid | 27.47 | 28.07 |
| HORVU4Hr1G080160.1 | Barley | plastid | 32.62 | 26.76 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G075370.2 | EnsemblPlantsGene:HORVU3Hr1G075370 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31529 | PANTHER:PTHR31529:SF8 |
| PFAM:PF03195 | PFscan:PS50891 | SEG:seg | UniParc:UPI000B46C8A3 | UniProt:A0A287LPW7 | MapMan:15.5.24 |
Description
No Description!
Coordinates
chrchr3H:-:563330965..563331752
Molecular Weight (calculated)
24950.5 Da
IEP (calculated)
7.789
GRAVY (calculated)
-0.317
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MQEPLPPRKR GGAVHGSAAR EQQQQQQADE TSSSSSAGPG APCGACKFLR RRCVPGCVFA PHFSGSGRER GAAQFAAVHR VFGASNVAKL LSRVPVALRR
101: DTARTVCYEA QARVADPVYG CVGTILALQH QVALLQGQLS VLQTQLFNCR LALASMHPDT AEQLAVLQPA YSAASAPSQM VNYDDLPQAV DFMDVEPQMR
201: GLESLQLSQP PHRDEDESQG VSPFSGNAGQ RQL
101: DTARTVCYEA QARVADPVYG CVGTILALQH QVALLQGQLS VLQTQLFNCR LALASMHPDT AEQLAVLQPA YSAASAPSQM VNYDDLPQAV DFMDVEPQMR
201: GLESLQLSQP PHRDEDESQG VSPFSGNAGQ RQL
001: MADQQRGHNT SDSRRKSLAG KRTSQQTPTS SLSSGGVSMA AATTGTGTAS PCGACKFLRR KCVSGCIFAP HFGSDQGAAR FAAVHKVFGA SNVSKLLHHI
101: PVNRRHDAVV TISYEAQARL SDPVYGCVST ILALQQQVAS LQAELSVVQS QLINSRVAMA NVMQQQTHHQ QQQQQLVVMQ QPEYSNNSSA STTLAGAAMN
201: SFTMTADAAA VSYDVMAPTN LEHSLQPMPP HQQRRGDYQH EDEEESGADF SVAVGSTAVA SKVIFPAEDF HRR
101: PVNRRHDAVV TISYEAQARL SDPVYGCVST ILALQQQVAS LQAELSVVQS QLINSRVAMA NVMQQQTHHQ QQQQQLVVMQ QPEYSNNSSA STTLAGAAMN
201: SFTMTADAAA VSYDVMAPTN LEHSLQPMPP HQQRRGDYQH EDEEESGADF SVAVGSTAVA SKVIFPAEDF HRR
Arabidopsis Description
LBD20LOB domain-containing protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRV3]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.