Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
- plastid 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35378 | Canola | cytosol, nucleus, plastid | 40.51 | 76.7 |
| KRG95644 | Soybean | nucleus | 78.46 | 71.83 |
| KRH67347 | Soybean | plastid | 76.41 | 69.95 |
| PGSC0003DMT400025135 | Potato | nucleus | 73.33 | 64.71 |
| GSMUA_Achr3P27340_001 | Banana | mitochondrion, plastid | 60.0 | 63.93 |
| Solyc09g066260.2.1 | Tomato | nucleus | 72.31 | 61.3 |
| Solyc06g083930.1.1 | Tomato | nucleus | 59.49 | 59.18 |
| PGSC0003DMT400051680 | Potato | nucleus | 57.95 | 57.95 |
| EER95498 | Sorghum | cytosol, nucleus, plastid | 47.18 | 54.76 |
| Zm00001d027678_P001 | Maize | cytosol, nucleus, plastid | 46.15 | 53.89 |
| EES07771 | Sorghum | plastid | 56.41 | 51.16 |
| Bra004693.1-P | Field mustard | plastid | 63.59 | 50.82 |
| CDY64515 | Canola | nucleus, plastid | 63.59 | 50.82 |
| CDY70198 | Canola | nucleus | 63.59 | 50.82 |
| Zm00001d051891_P001 | Maize | plastid | 55.9 | 50.46 |
| Os02t0820500-01 | Rice | plastid | 55.9 | 50.46 |
| CDY14831 | Canola | nucleus | 63.59 | 50.41 |
| AT2G42430.1 | Thale cress | plastid | 63.08 | 50.2 |
| CDY47969 | Canola | nucleus | 63.08 | 50.0 |
| Bra016877.1-P | Field mustard | nucleus | 63.08 | 50.0 |
| Bra000257.1-P | Field mustard | nucleus | 61.03 | 50.0 |
| CDY22562 | Canola | nucleus | 60.51 | 49.58 |
| TraesCS6A01G398400.1 | Wheat | plastid | 52.31 | 49.51 |
| TraesCS6D01G382600.1 | Wheat | plastid | 52.82 | 49.28 |
| Os03t0149000-01 | Rice | plastid | 46.67 | 49.19 |
| HORVU0Hr1G017670.2 | Barley | plastid | 51.28 | 47.62 |
| TraesCS6B01G438700.1 | Wheat | plastid | 51.28 | 47.39 |
| HORVU4Hr1G080150.1 | Barley | plastid | 44.62 | 47.28 |
| TraesCS4A01G415300.1 | Wheat | plastid | 44.62 | 47.03 |
| TraesCS4D01G312700.1 | Wheat | plastid | 44.1 | 45.99 |
| VIT_07s0005g03020.t01 | Wine grape | mitochondrion, nucleus | 54.36 | 45.69 |
| TraesCS4B01G316100.1 | Wheat | plastid | 43.59 | 45.45 |
| VIT_15s0048g00840.t01 | Wine grape | cytosol, nucleus, plastid | 42.05 | 42.27 |
| VIT_13s0019g02060.t01 | Wine grape | mitochondrion, nucleus | 43.08 | 38.36 |
| VIT_13s0019g03810.t01 | Wine grape | plastid | 27.18 | 38.13 |
| VIT_08s0056g01650.t01 | Wine grape | cytosol, nucleus, plastid | 46.15 | 37.82 |
| VIT_15s0048g00830.t01 | Wine grape | nucleus | 47.18 | 36.65 |
| VIT_13s0067g01450.t01 | Wine grape | plastid | 31.79 | 36.26 |
| VIT_16s0100g00440.t01 | Wine grape | mitochondrion | 26.67 | 33.99 |
| VIT_13s0019g03800.t01 | Wine grape | plastid | 25.13 | 33.33 |
| VIT_13s0019g03830.t01 | Wine grape | plastid | 28.21 | 32.54 |
| VIT_13s0019g03820.t01 | Wine grape | nucleus, plastid | 28.21 | 28.65 |
| VIT_13s0019g03840.t01 | Wine grape | nucleus, plastid | 28.21 | 28.35 |
Protein Annotations
| ArrayExpress:VIT_07s0005g03030 | EMBL:FN596502 | EnsemblPlants:VIT_07s0005g03030.t01 | EnsemblPlantsGene:VIT_07s0005g03030 | EntrezGene:100261792 | EntrezGene:LOC100261792 |
| InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31529 | PANTHER:PTHR31529:SF4 | PFAM:PF03195 |
| PFscan:PS50891 | ProteinID:CBI37088 | ProteinID:CBI37088.3 | RefSeq:XP_002263559 | RefSeq:XP_002263559.1 | SEG:seg |
| UniParc:UPI00015CD0C3 | UniProt:D7U2X2 | wikigene:100261792 | wikigene:LOC100261792 | MapMan:15.5.24 | : |
Description
No Description!
Coordinates
chr7:-:5846565..5847593
Molecular Weight (calculated)
21462.7 Da
IEP (calculated)
7.643
GRAVY (calculated)
-0.196
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MASASGSPCG ACKFLRRKCA ADCVFAPYFC SEQGPARFAA IHKVFGASNV SKLLLHVPVA DRCEAVVTIA YEAQARIRDP VYGCVAHIFA LQQQVACLQA
101: QLMQLKAQLA NNTGNLENQW QGNVSGAPSF QNFPGYMNSV SPQCSLELID HNSDGMTMQD IQSRDEFSFQ TCSRKRPPHN DLGELQELAL RMMRN
101: QLMQLKAQLA NNTGNLENQW QGNVSGAPSF QNFPGYMNSV SPQCSLELID HNSDGMTMQD IQSRDEFSFQ TCSRKRPPHN DLGELQELAL RMMRN
001: MASSGNGTTA GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN
Arabidopsis Description
LBD16LOB domain-containing protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLB7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.