CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67347	Soybean	plastid	93.43	93.43
VIT_07s0005g03030.t01	Wine grape	plastid	71.83	78.46
KRH19529	Soybean	plastid	41.31	72.73
KRH32155	Soybean	plastid	69.48	69.48
GSMUA_Achr3P27340_001	Banana	mitochondrion, plastid	54.46	63.39
PGSC0003DMT400025135	Potato	nucleus	65.73	63.35
Solyc06g083930.1.1	Tomato	nucleus	56.81	61.73
PGSC0003DMT400051680	Potato	nucleus	55.4	60.51
Solyc09g066260.2.1	Tomato	nucleus	65.26	60.43
KRG95645	Soybean	mitochondrion, nucleus	44.13	45.19
KRH67348	Soybean	nucleus	43.19	43.4
KRH19530	Soybean	mitochondrion, nucleus	46.95	42.19
KRH76281	Soybean	cytosol, nucleus, plastid	38.97	41.92
KRH32157	Soybean	mitochondrion, nucleus	46.95	41.84
KRH73761	Soybean	cytosol, nucleus, plastid	14.08	41.67
KRH65255	Soybean	cytosol, nucleus, plastid	40.85	41.04
KRH40590	Soybean	plastid	42.72	39.22
KRH76282	Soybean	plastid	45.07	38.87
KRH00577	Soybean	plastid	41.31	37.61
KRH59547	Soybean	mitochondrion, nucleus, plastid	24.88	37.06
KRH65254	Soybean	plastid	43.66	37.05
KRG94981	Soybean	nucleus	41.31	36.82
KRH32932	Soybean	cytosol, mitochondrion, nucleus	40.85	36.4
KRH71749	Soybean	cytosol, mitochondrion, nucleus	39.91	35.71
KRH14351	Soybean	mitochondrion	23.94	35.66
KRH73061	Soybean	mitochondrion, nucleus	34.74	33.64
KRG97704	Soybean	mitochondrion	28.17	33.52
KRH14922	Soybean	mitochondrion	28.17	32.97
KRH73279	Soybean	mitochondrion	28.17	31.91
KRH31169	Soybean	mitochondrion	28.17	31.75
KRH15078	Soybean	plastid	33.33	30.74

Protein Annotations

EMBL:ACUP02012124	EnsemblPlants:KRG95644	EnsemblPlantsGene:GLYMA_19G162900	EntrezGene:100801508	InterPro:IPR004883	InterPro:LOB
ncoils:Coil	PANTHER:PTHR31529	PANTHER:PTHR31529:SF4	PFAM:PF03195	PFscan:PS50891	ProteinID:KRG95644
ProteinID:KRG95644.1	SEG:seg	UniParc:UPI000233EEA9	UniProt:I1N9P5	MapMan:15.5.24	:

Description

hypothetical protein

Coordinates

chr19:+:42363118..42364857

Molecular Weight (calculated)

23420.8 Da

IEP (calculated)

7.111

GRAVY (calculated)

-0.363

Length

213 amino acids

Sequence
(BLAST)

001: MASASGNGGS NGTGSPCGAC KFLRRKCAAD CIFAPYFCSE QGPARFAAIH KVFGASNVSK LLLHIPAHDR CEAVVTIAYE AQARIRDPVY GCVSHIFALQ
101: QQVACLQAQL MQVKAQLAQN LVESRNIESN HQWTGNNNSV SGQPMNHPFC PTYMNPISPQ SSLESIDHSS INDGMSMQDI QSREDFQIQA KERPYNNNDL
201: GELQELALRM MRN

Best Arabidopsis Sequence Match ( AT2G42430.1 )
(BLAST)

001: MASSGNGTTA GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN

Arabidopsis Description

LBD16LOB domain-containing protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLB7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.