Factsheet for GSMUA_Achr1P01360_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P25190_001	Banana	mitochondrion	52.34	52.34
GSMUA_Achr10P...	Banana	mitochondrion	52.34	51.14
GSMUA_Achr1P06580_001	Banana	mitochondrion	49.53	50.72
GSMUA_Achr5P13230_001	Banana	mitochondrion, plastid	45.33	50.26
GSMUA_Achr11P...	Banana	mitochondrion	49.07	49.76
GSMUA_AchrUn_...	Banana	mitochondrion	53.74	49.57
VIT_07s0005g03020.t01	Wine grape	mitochondrion, nucleus	52.8	48.71
GSMUA_AchrUn_...	Banana	mitochondrion	50.93	48.23
KRH67348	Soybean	nucleus	46.73	47.17
KRG95645	Soybean	mitochondrion, nucleus	45.79	47.12
TraesCS4D01G001700.1	Wheat	mitochondrion	47.66	47.0
GSMUA_Achr8P14330_001	Banana	mitochondrion	50.47	46.15
KRH32157	Soybean	mitochondrion, nucleus	51.4	46.03
KRH19530	Soybean	mitochondrion, nucleus	50.47	45.57
HORVU4Hr1G000880.4	Barley	cytosol, nucleus, plastid	47.66	45.33
TraesCS4A01G312500.1	Wheat	mitochondrion	46.26	45.21
GSMUA_Achr1P01350_001	Banana	nucleus	42.06	44.78
GSMUA_Achr3P27340_001	Banana	mitochondrion, plastid	37.85	44.26
TraesCSU01G132900.1	Wheat	nucleus	48.13	43.83
TraesCS6A01G053700.1	Wheat	nucleus	47.2	42.62
TraesCS4B01G001200.1	Wheat	nucleus	47.2	42.26
TraesCS6B01G072200.1	Wheat	nucleus	46.26	41.77
Solyc09g066270.2.1	Tomato	nucleus	47.2	41.39
PGSC0003DMT400025142	Potato	nucleus	47.2	41.22
GSMUA_Achr2P11240_001	Banana	plastid	44.86	40.68
GSMUA_Achr5P11330_001	Banana	plastid	43.46	38.59
GSMUA_Achr1P02520_001	Banana	cytosol, nucleus, plastid	42.99	38.02
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	42.99	35.8
GSMUA_Achr11P...	Banana	mitochondrion	22.43	30.57
GSMUA_Achr4P28810_001	Banana	nucleus	38.32	27.8

Protein Annotations

EnsemblPlants:GSMUA_Achr1P01360_001	EnsemblPlants:GSMUA_Achr1T01360_001	EnsemblPlantsGene:GSMUA_Achr1G01360_001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31529	PANTHER:PTHR31529:SF2	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI0002948AEC
UniProt:M0RW44	MapMan:15.5.24	:	:	:	:

Description

DUF260 domain containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G01360_001]

Coordinates

chr1:-:1077808..1078530

Molecular Weight (calculated)

22639.8 Da

IEP (calculated)

7.100

GRAVY (calculated)

0.035

Length

214 amino acids

Sequence
(BLAST)

001: MAGCGSPCGA CKFLRRKCLS GCVFAPHFCH EKGAAHFAAI HKVFGASNAS KLLMHLPPAD RSEAAVTISY EAQARLLDPV YGCVAQIFAL QRQVVLLQAQ
101: LASLKAQAQL ALGNGTTSPG EGIAPPAYAS IFSTNDWLAD CNSCRSSHDC NSHFAMVEDE AMVFRIQSED APRSMASLDV QAGPWRSSAS SSSSSSYTDV
201: EGLLSVAFAY PGRS

Best Arabidopsis Sequence Match ( AT2G31310.1 )
(BLAST)

001: MGGLGSPCGG CKFLRRKCVE GCVFAPYFCY EEGSSNFAAI HKVFGASNFS KLISHLPDHD RCDAVRTISY EAHSRLHDPI YGCVSQIFSL QQQVVSLQAQ
101: VVLLREEASR RFPQDDPGCN MKQQEKVLAQ QMPQDLHNWF HQGILDSDFD PMSGTTRDNE RSMDHNESPC SSNESLNYYQ EVNFPWSV

Arabidopsis Description

LBD14LOB domain-containing protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.