Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G001700.1 | Wheat | mitochondrion | 84.52 | 93.09 |
| TraesCS4A01G312500.1 | Wheat | mitochondrion | 82.43 | 89.95 |
| HORVU4Hr1G000880.4 | Barley | cytosol, nucleus, plastid | 80.33 | 85.33 |
| TraesCS6B01G072200.1 | Wheat | nucleus | 80.75 | 81.43 |
| GSMUA_Achr1P01360_001 | Banana | mitochondrion, nucleus, plastid | 42.26 | 47.2 |
| KRG95645 | Soybean | mitochondrion, nucleus | 40.17 | 46.15 |
| TraesCS4B01G316100.1 | Wheat | plastid | 35.98 | 45.99 |
| VIT_07s0005g03020.t01 | Wine grape | mitochondrion, nucleus | 43.93 | 45.26 |
| KRH67348 | Soybean | nucleus | 39.75 | 44.81 |
| KRH19530 | Soybean | mitochondrion, nucleus | 42.68 | 43.04 |
| KRH32157 | Soybean | mitochondrion, nucleus | 42.26 | 42.26 |
| PGSC0003DMT400025142 | Potato | nucleus | 40.59 | 39.59 |
| TraesCS6B01G438700.1 | Wheat | plastid | 34.73 | 39.34 |
| Solyc09g066270.2.1 | Tomato | nucleus | 39.75 | 38.93 |
| TraesCS4B01G316200.1 | Wheat | nucleus, plastid | 41.0 | 34.03 |
| TraesCS4B01G224600.1 | Wheat | plastid | 35.98 | 32.82 |
| TraesCS4B01G346500.1 | Wheat | cytosol, mitochondrion, nucleus | 21.76 | 30.95 |
| TraesCS7B01G195100.1 | Wheat | cytosol, nucleus, plastid | 28.87 | 30.13 |
| TraesCS5B01G282700.1 | Wheat | nucleus | 22.18 | 27.89 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G001200.1 | EnsemblPlantsGene:TraesCS4B01G001200 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31529 |
| PANTHER:PTHR31529:SF2 | PFAM:PF03195 | PFscan:PS50891 | SEG:seg | MapMan:15.5.24 | : |
Description
No Description!
Coordinates
chr4B:-:805213..806039
Molecular Weight (calculated)
26301.7 Da
IEP (calculated)
5.967
GRAVY (calculated)
-0.421
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MIHSTSCKEQ EYTTSIDQAP GAMTGFSSPC GACKFLRRRC VNGCVFAPHF CHEQGAAHFA AIHKVFGASN ASKLLMSLPA TDRREAAATI SYEAQARLHD
101: PVYGCVAHIF ALQQQVVNLQ AQLESLKAQE PVQGRTNTCS VSSPEEDSIK AKAMAYQKGE ARMPQPGHSV KIERESYFGN DAMTSCTCMQ YSQDYNSSHV
201: YATDYPASFN DDSIHSSTMF PVDMQEYLQE SGYYDAEGL
101: PVYGCVAHIF ALQQQVVNLQ AQLESLKAQE PVQGRTNTCS VSSPEEDSIK AKAMAYQKGE ARMPQPGHSV KIERESYFGN DAMTSCTCMQ YSQDYNSSHV
201: YATDYPASFN DDSIHSSTMF PVDMQEYLQE SGYYDAEGL
001: MTGSGSPCGA CKFLRRRCVK GCVFAPYFCH EQGASHFAAI HQVFGASNAS KLLSHLPMED RREAATTIYY EAQARRQDPI YGCVSHIFSL QQQVVNLQTQ
101: LEILKQQATQ SMMAIDSPSI ENPNYYQDTK PQYLQESHDL HHHHLTTSNC QTEQNSDLKN IMTSCYHQME IETTPFTGAG GDTMAGSYYY NSSSGCSEEL
201: KSVSTNGEFS KYSELDQHLT NTFNQYRHGG NNLISESLGY ITYS
101: LEILKQQATQ SMMAIDSPSI ENPNYYQDTK PQYLQESHDL HHHHLTTSNC QTEQNSDLKN IMTSCYHQME IETTPFTGAG GDTMAGSYYY NSSSGCSEEL
201: KSVSTNGEFS KYSELDQHLT NTFNQYRHGG NNLISESLGY ITYS
Arabidopsis Description
LBD17LOB domain-containing protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLB6]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.