Factsheet for GSMUA_Achr1P06580_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 5
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	mitochondrion	68.9	65.75
GSMUA_Achr4P25190_001	Banana	mitochondrion	55.98	54.67
GSMUA_AchrUn_...	Banana	mitochondrion	56.94	51.29
VIT_07s0005g03020.t01	Wine grape	mitochondrion, nucleus	56.46	50.86
GSMUA_Achr1P01360_001	Banana	mitochondrion, nucleus, plastid	50.72	49.53
GSMUA_Achr11P...	Banana	mitochondrion	48.33	47.87
GSMUA_AchrUn_...	Banana	mitochondrion	51.67	47.79
KRH19530	Soybean	mitochondrion, nucleus	54.07	47.68
KRG95645	Soybean	mitochondrion, nucleus	47.37	47.6
KRH32157	Soybean	mitochondrion, nucleus	54.07	47.28
KRH67348	Soybean	nucleus	47.85	47.17
GSMUA_Achr1P01350_001	Banana	nucleus	44.98	46.77
GSMUA_Achr5P13230_001	Banana	mitochondrion, plastid	42.58	46.11
GSMUA_Achr3P27340_001	Banana	mitochondrion, plastid	40.19	45.9
GSMUA_Achr8P14330_001	Banana	mitochondrion	50.24	44.87
Solyc09g066270.2.1	Tomato	nucleus	51.67	44.26
PGSC0003DMT400025142	Potato	nucleus	51.2	43.67
GSMUA_Achr2P11240_001	Banana	plastid	43.54	38.56
GSMUA_Achr5P11330_001	Banana	plastid	43.06	37.34
GSMUA_Achr1P02520_001	Banana	cytosol, nucleus, plastid	42.11	36.36
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	42.58	34.63
GSMUA_Achr11P...	Banana	mitochondrion	24.4	32.48
GSMUA_Achr4P28810_001	Banana	nucleus	37.8	26.78

Protein Annotations

EnsemblPlants:GSMUA_Achr1P06580_001	EnsemblPlants:GSMUA_Achr1T06580_001	EnsemblPlantsGene:GSMUA_Achr1G06580_001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31529	PANTHER:PTHR31529:SF2	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI000295D250
UniProt:M0RXL6	MapMan:15.5.24	:	:	:	:

Description

DUF260 domain containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G06580_001]

Coordinates

chr1:+:5256039..5256741

Molecular Weight (calculated)

22837.9 Da

IEP (calculated)

6.568

GRAVY (calculated)

-0.236

Length

209 amino acids

Sequence
(BLAST)

001: MTGFGSPCGA CKFLRRKCVR GCVFAPYFCH EQGAAHFAAI HKVFGASNAS KLLLQLPVSD RPEAALTISY EAQARLQDPV YGCVSHIFAL QQQILTLEAQ
101: LASLKAQTAR GFGNEDEFSE KLPRHRQGDS FLRPLGSDAA TNPQLMPYPD DAVLSSQQCH HHHSSYVTDD GSSCAMANSL DVQDNAWRPA CHDMEELLQS
201: VAFGHLNCA

Best Arabidopsis Sequence Match ( AT3G58190.1 )
(BLAST)

001: MTSSSSSSGS PCGACKFLRR KCAKGCVFAP YFCHEQGASH FAAIHKVFGA SNASKLLSHL PISDRCEAAI TISYEAQARL QDPIYGCVSH IFALQQQVVN
101: LQAELEILKQ QAAQSMIFAD SPTSENPNSY YGDTTKAPYH HDHQNIYHHH DQTHLVYQTG SSGTVQHGDA TESSYHNETS SGMGEFSIYS DLEQHLNTFN
201: QDHLKELQSA NFGYISFS

Arabidopsis Description

LBD29LBD29 [Source:UniProtKB/TrEMBL;Acc:A0A178VM67]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.