Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU80868 | Sorghum | peroxisome | 80.1 | 82.09 |
| TraesCS4D01G341500.1 | Wheat | cytosol, mitochondrion, nucleus | 46.6 | 55.49 |
| TraesCS5A01G515300.1 | Wheat | cytosol | 48.06 | 55.31 |
| TraesCS4B01G346500.1 | Wheat | cytosol, mitochondrion, nucleus | 44.66 | 54.76 |
| TraesCS5A01G284000.1 | Wheat | nucleus | 49.51 | 54.26 |
| TraesCS5D01G291300.1 | Wheat | nucleus | 49.51 | 53.97 |
| HORVU4Hr1G084750.2 | Barley | cytosol, nucleus | 45.63 | 53.11 |
| TraesCS5B01G282700.1 | Wheat | nucleus | 48.54 | 52.63 |
| HORVU5Hr1G075950.1 | Barley | cytosol, nucleus | 21.84 | 51.72 |
| CDX83633 | Canola | cytosol, mitochondrion, nucleus, plastid | 27.18 | 47.86 |
| Zm00001d034384_P001 | Maize | plastid | 37.86 | 47.56 |
| AT3G26660.1 | Thale cress | mitochondrion | 27.18 | 46.28 |
| AT3G26620.1 | Thale cress | mitochondrion | 27.18 | 46.28 |
| CDY13647 | Canola | cytosol, mitochondrion, nucleus, plastid | 27.18 | 46.28 |
| CDX75748 | Canola | cytosol, mitochondrion, nucleus | 26.7 | 45.83 |
| CDX82498 | Canola | cytosol, nucleus, plastid | 26.7 | 45.45 |
| Solyc01g109240.1.1 | Tomato | mitochondrion | 26.21 | 44.63 |
| GSMUA_Achr11P... | Banana | mitochondrion | 33.5 | 43.95 |
| CDY48982 | Canola | mitochondrion | 25.24 | 42.98 |
| CDY28537 | Canola | mitochondrion | 25.24 | 42.98 |
| TraesCS1D01G110300.1 | Wheat | cytosol, mitochondrion, nucleus | 43.69 | 42.65 |
| Os08t0517100-01 | Rice | cytosol, nucleus, plastid | 19.42 | 42.11 |
| KRH14351 | Soybean | mitochondrion | 26.7 | 38.46 |
| VIT_16s0100g00440.t01 | Wine grape | mitochondrion | 27.67 | 37.25 |
| KRH59547 | Soybean | mitochondrion, nucleus, plastid | 25.24 | 36.36 |
| Bra025217.1-P | Field mustard | cytosol | 18.45 | 35.51 |
| Solyc06g064540.1.1 | Tomato | mitochondrion, plastid | 24.76 | 34.46 |
| Zm00001d027678_P001 | Maize | cytosol, nucleus, plastid | 24.76 | 30.54 |
| Zm00001d051891_P001 | Maize | plastid | 28.16 | 26.85 |
| Zm00001d043311_P001 | Maize | plastid | 28.16 | 26.24 |
| Zm00001d030364_P001 | Maize | plastid | 29.61 | 24.9 |
| Zm00001d031882_P001 | Maize | plastid | 25.73 | 24.65 |
| Zm00001d028413_P001 | Maize | plastid | 29.61 | 23.46 |
| Zm00001d048401_P001 | Maize | nucleus | 26.21 | 23.08 |
| Zm00001d047921_P001 | Maize | plastid | 29.61 | 23.02 |
| Zm00001d027679_P001 | Maize | cytosol, nucleus | 27.18 | 22.95 |
| Bra032938.1-P | Field mustard | nucleus | 23.79 | 16.67 |
| Zm00001d018832_P001 | Maize | nucleus | 22.82 | 7.65 |
| Zm00001d007919_P001 | Maize | mitochondrion | 24.76 | 7.47 |
Protein Annotations
| EnsemblPlants:Zm00001d031544_P001 | EnsemblPlants:Zm00001d031544_T001 | EnsemblPlantsGene:Zm00001d031544 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil |
| PANTHER:PTHR31301 | PANTHER:PTHR31301:SF56 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:ONM03119.1 | SEG:seg |
| UniParc:UPI000842E7CF | UniProt:A0A1D6KJL1 | MapMan:15.5.24 | : | : | : |
Description
LBD-transcription factor 8LOB domain-containing protein 23
Coordinates
chr1:-:193781401..193782215
Molecular Weight (calculated)
21562.4 Da
IEP (calculated)
7.137
GRAVY (calculated)
-0.338
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAAGGGGGG GSNMEMDQHP DSGGGSAAAS RRCAACKYLR RRCAPGCVLA PYFPASQPRR YADVHAVFGT SNVTRVLQSL PVQERGRAAD TMATEAHCRV
101: QDPVYGCTGI IHRLQQEIRD VQRQLATTRA QLATMHVHGG TAPPPPPPLA AAGAGAAAAT VAVSSGGRRR VSVHDDDEEE APLTVDPAEF LDLDAWPPLT
201: SELCRP
101: QDPVYGCTGI IHRLQQEIRD VQRQLATTRA QLATMHVHGG TAPPPPPPLA AAGAGAAAAT VAVSSGGRRR VSVHDDDEEE APLTVDPAEF LDLDAWPPLT
201: SELCRP
001: MNPKRCAACK YLRRRCPKDC VFSPYFPPND PQKFACVHRI YGAGNVSKML QQLPDQTRAE AVESLCFEAK CRVDDPVYGC VGIIHLLKTQ IQKTQNELAK
101: TQAEIAVAQT KLSQTQNSDF M
101: TQAEIAVAQT KLSQTQNSDF M
Arabidopsis Description
LBD24LOB domain-containing protein 24 [Source:UniProtKB/Swiss-Prot;Acc:P59468]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.