Factsheet for Zm00001d027679_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

mitochondrion 5
plastid 2

Predictors

GFP

MS/MS

Papers

cytosol: 22527397
nucleus: 22527397

gfp PMID: 22527397 doi

C Majer, C Xu, KW Berendzen, F Hochholdinger

ZMBP, Center for Plant Molecular Biology, Department of General Genetics, University of Tuebingen, Auf der Morgenstelle 28, 72076 Tuebingen, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048401_P001	Maize	nucleus	74.59	77.78
TraesCS4D01G312800.1	Wheat	plastid	73.36	62.59
HORVU4Hr1G080160.1	Barley	plastid	72.54	62.32
TraesCS4B01G316200.1	Wheat	nucleus, plastid	72.95	61.81
TraesCS4A01G415400.1	Wheat	nucleus	72.95	61.59
GSMUA_Achr4P25190_001	Banana	mitochondrion	45.9	52.34
Zm00001d027678_P001	Maize	cytosol, nucleus, plastid	35.25	51.5
KRG95645	Soybean	mitochondrion, nucleus	42.62	50.0
GSMUA_AchrUn_...	Banana	mitochondrion	47.54	50.0
VIT_07s0005g03020.t01	Wine grape	mitochondrion, nucleus	47.54	50.0
GSMUA_Achr11P...	Banana	mitochondrion	42.62	49.29
Zm00001d031882_P001	Maize	plastid	43.03	48.84
KRH67348	Soybean	nucleus	41.8	48.11
KRH19530	Soybean	mitochondrion, nucleus	45.9	47.26
Zm00001d051891_P001	Maize	plastid	41.39	46.76
KRH32157	Soybean	mitochondrion, nucleus	45.49	46.44
PGSC0003DMT400025142	Potato	nucleus	45.49	45.31
GSMUA_Achr8P14330_001	Banana	mitochondrion	43.44	45.3
Solyc09g066270.2.1	Tomato	nucleus	45.08	45.08
Zm00001d028413_P001	Maize	plastid	40.16	37.69
Zm00001d030364_P001	Maize	plastid	36.89	36.73
Zm00001d047921_P001	Maize	plastid	39.75	36.6
Zm00001d043311_P001	Maize	plastid	29.92	33.03
Zm00001d034384_P001	Maize	plastid	20.49	30.49
Zm00001d031544_P001	Maize	plastid	22.95	27.18
Zm00001d018832_P001	Maize	nucleus	24.59	9.77
Zm00001d007919_P001	Maize	mitochondrion	25.41	9.08

Protein Annotations

EMBL:EF051732	EnsemblPlants:Zm00001d027679_P001	EnsemblPlants:Zm00001d027679_T001	EnsemblPlantsGene:Zm00001d027679	EntrezGene:100101548	InterPro:IPR004883
InterPro:LOB	ncoils:Coil	PANTHER:PTHR31529	PANTHER:PTHR31529:SF4	PFAM:PF03195	PFscan:PS50891
ProteinID:ONL93675.1	SEG:seg	UniParc:UPI0000DA6EB4	UniProt:A5H448	MapMan:15.5.24	:

Description

rootless concerning crown and seminal roots1 rootless concerning crown and seminal roots1

Coordinates

chr1:-:10992938..10994177

Molecular Weight (calculated)

25471.5 Da

IEP (calculated)

6.009

GRAVY (calculated)

-0.165

Length

244 amino acids

Sequence
(BLAST)

001: MTGFGSPCGA CKFLRRKCVR GCVFAPYFCH EQGAAHFAAI HKVFGASNVS KLLAHLPLAD RAEAAVTISY EAQARLRDPI YGCVAHIFAL QQQVMTLQAQ
101: LASLKAQAAQ GQQGVHEDAK GYVGSAAAEQ LGYGYPWCSG NGGAAAAAAG AVGAPAAQPG AYGNGAHESL TALLGSSDYM QQSLYHAFEQ AGADDDDGRQ
201: GYAFEAAAES SSLGAEESGW RSSSGYQDCE DLQSVAYAYL NHRS

Best Arabidopsis Sequence Match ( AT3G58190.1 )
(BLAST)

001: MTSSSSSSGS PCGACKFLRR KCAKGCVFAP YFCHEQGASH FAAIHKVFGA SNASKLLSHL PISDRCEAAI TISYEAQARL QDPIYGCVSH IFALQQQVVN
101: LQAELEILKQ QAAQSMIFAD SPTSENPNSY YGDTTKAPYH HDHQNIYHHH DQTHLVYQTG SSGTVQHGDA TESSYHNETS SGMGEFSIYS DLEQHLNTFN
201: QDHLKELQSA NFGYISFS

Arabidopsis Description

LBD29LBD29 [Source:UniProtKB/TrEMBL;Acc:A0A178VM67]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.