Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU88465 | Sorghum | nucleus | 66.91 | 48.82 |
| Zm00001d018832_P001 | Maize | nucleus | 29.14 | 32.41 |
| Zm00001d027678_P001 | Maize | cytosol, nucleus, plastid | 7.47 | 30.54 |
| Zm00001d051891_P001 | Maize | plastid | 9.52 | 30.09 |
| Zm00001d047921_P001 | Maize | plastid | 11.13 | 28.68 |
| Zm00001d030364_P001 | Maize | plastid | 10.25 | 28.57 |
| Zm00001d028413_P001 | Maize | plastid | 10.69 | 28.08 |
| Zm00001d034384_P001 | Maize | plastid | 6.73 | 28.05 |
| Zm00001d043311_P001 | Maize | plastid | 8.78 | 27.15 |
| Zm00001d031882_P001 | Maize | plastid | 8.05 | 25.58 |
| Zm00001d027679_P001 | Maize | cytosol, nucleus | 9.08 | 25.41 |
| Zm00001d031544_P001 | Maize | plastid | 7.47 | 24.76 |
| Zm00001d048401_P001 | Maize | nucleus | 8.2 | 23.93 |
Protein Annotations
| EnsemblPlants:Zm00001d007919_P001 | EnsemblPlants:Zm00001d007919_T001 | EnsemblPlantsGene:Zm00001d007919 | EntrezGene:107161152 | InterPro:IPR004883 | InterPro:LOB |
| ncoils:Coil | PANTHER:PTHR31301 | PANTHER:PTHR31301:SF15 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:ONM27924.1 |
| SEG:seg | UniParc:UPI000221E2CA | UniProt:A0A1D6F9Z0 | MapMan:15.5.24 | : | : |
Description
LBD-transcription factor 15
Coordinates
chr2:+:242414840..242416891
Molecular Weight (calculated)
74600.0 Da
IEP (calculated)
4.256
GRAVY (calculated)
-0.466
Length
683 amino acids
Sequence
(BLAST)
(BLAST)
001: MPADGGAVAG APCGACRTLR CRCVPRCVFA AYFSAEEFAA VHGVFGASNV SKMPEDIGLP EQRRLAVDTL VEEARAWARD PTFDRVSYLC ILQDQEVNDK
101: YREQVDDARE EFDAEVASEP VDVAAAGLEA QAQAQVDAAL QHEQDYRLLG GWGATTGEQQ HLVTQDAENE HGIILGHGHP AELSQEILQL QELLDMAELS
201: RNRKQQIIQK TEMGQYWDAA AGGAREHDLL TMMQQAPAAA WQHQYPAPQY AGIRGGPGGH QEMPQPMEEA CTAEFATGMG IMSQQFASAQ PYHDHDPAAV
301: PHASPWLQRM PEAQQPAAAS QVASEQDMLL LLLLQQHQVA AAGLMSAGGA RQLDNVAAQY DDTEVALGYG YGHPDMHQHQ HQQVAAAGQV AGVDDDMNPR
401: EMTQQQHAQQ GLDIALGNGH LDGETEAMLQ ELAALLEQAG KQETIRKQQG VATGMGQWDA VTGIAWEQDV TTMTHQQSPD AAAWLQVQEM LEQMEEASST
501: PEFAEIIAWQ AEARYAQEEL AITLGNDHPD WSTQDILQAQ ELFAMAELAR KQEMVRNLVA AAALAREQEM IAQQQQHPEA QYSGTELDIS LWQGPGHGHP
601: YWHQPTMQQM LQEKQLPTVQ QLLQEQQLAD AIGFGTHQAS TTLVPQYANG EHGSGTGAAM AFQSPGSDKD APFPFPFPLY VGL
101: YREQVDDARE EFDAEVASEP VDVAAAGLEA QAQAQVDAAL QHEQDYRLLG GWGATTGEQQ HLVTQDAENE HGIILGHGHP AELSQEILQL QELLDMAELS
201: RNRKQQIIQK TEMGQYWDAA AGGAREHDLL TMMQQAPAAA WQHQYPAPQY AGIRGGPGGH QEMPQPMEEA CTAEFATGMG IMSQQFASAQ PYHDHDPAAV
301: PHASPWLQRM PEAQQPAAAS QVASEQDMLL LLLLQQHQVA AAGLMSAGGA RQLDNVAAQY DDTEVALGYG YGHPDMHQHQ HQQVAAAGQV AGVDDDMNPR
401: EMTQQQHAQQ GLDIALGNGH LDGETEAMLQ ELAALLEQAG KQETIRKQQG VATGMGQWDA VTGIAWEQDV TTMTHQQSPD AAAWLQVQEM LEQMEEASST
501: PEFAEIIAWQ AEARYAQEEL AITLGNDHPD WSTQDILQAQ ELFAMAELAR KQEMVRNLVA AAALAREQEM IAQQQQHPEA QYSGTELDIS LWQGPGHGHP
601: YWHQPTMQQM LQEKQLPTVQ QLLQEQQLAD AIGFGTHQAS TTLVPQYANG EHGSGTGAAM AFQSPGSDKD APFPFPFPLY VGL
001: MASSSNSYNS PCAACKFLRR KCMPGCIFAP YFPPEEPHKF ANVHKIFGAS NVTKLLNELL PHQREDAVNS LAYEAEARVR DPVYGCVGAI SYLQRQVHRL
101: QKELDAANAD LAHYGLSTSA AGAPGNVVDL VFQPQPLPSQ QLPPLNPVYR LSGASPVMNQ MPRGTGGSYG TFLPWNNGHD QQGGNM
101: QKELDAANAD LAHYGLSTSA AGAPGNVVDL VFQPQPLPSQ QLPPLNPVYR LSGASPVMNQ MPRGTGGSYG TFLPWNNGHD QQGGNM
Arabidopsis Description
LOBLOB [Source:UniProtKB/TrEMBL;Acc:A0A178UKE6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.