Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g044520.1.1 | Tomato | nucleus | 88.28 | 66.08 |
| VIT_13s0019g03760.t01 | Wine grape | plastid | 42.19 | 39.42 |
| PGSC0003DMT400078256 | Potato | mitochondrion, nucleus, plastid | 44.53 | 32.95 |
| PGSC0003DMT400010597 | Potato | cytosol, nucleus, plastid | 43.75 | 32.37 |
| PGSC0003DMT400061511 | Potato | mitochondrion | 42.97 | 32.16 |
| VIT_13s0019g03710.t01 | Wine grape | nucleus, plastid | 41.41 | 32.12 |
| VIT_13s0019g03720.t01 | Wine grape | nucleus, plastid | 39.84 | 31.48 |
| PGSC0003DMT400019410 | Potato | plastid | 48.44 | 31.31 |
| PGSC0003DMT400022286 | Potato | cytosol, mitochondrion, nucleus, plastid | 41.41 | 30.99 |
| PGSC0003DMT400065297 | Potato | plastid | 51.56 | 30.56 |
| PGSC0003DMT400054637 | Potato | cytosol, nucleus, plastid | 38.28 | 30.43 |
| VIT_13s0019g03750.t01 | Wine grape | plastid | 40.62 | 29.89 |
| PGSC0003DMT400065346 | Potato | plastid | 48.44 | 29.67 |
| VIT_13s0019g03780.t01 | Wine grape | plastid | 39.06 | 28.9 |
| PGSC0003DMT400061283 | Potato | mitochondrion, nucleus | 36.72 | 27.81 |
| PGSC0003DMT400032875 | Potato | plastid | 31.25 | 25.48 |
| PGSC0003DMT400052995 | Potato | plastid | 36.72 | 23.38 |
| PGSC0003DMT400017805 | Potato | plastid | 30.47 | 23.21 |
| PGSC0003DMT400046644 | Potato | nucleus, plastid | 34.38 | 23.04 |
| PGSC0003DMT400002549 | Potato | plastid | 33.59 | 22.75 |
| PGSC0003DMT400069646 | Potato | plastid | 29.69 | 21.71 |
| PGSC0003DMT400078265 | Potato | cytosol, nucleus, plastid | 34.38 | 19.82 |
| PGSC0003DMT400074783 | Potato | mitochondrion | 34.38 | 16.06 |
| PGSC0003DMT400002013 | Potato | nucleus | 32.81 | 14.63 |
| PGSC0003DMT400025959 | Potato | nucleus | 34.38 | 14.06 |
| PGSC0003DMT400002011 | Potato | nucleus | 31.25 | 13.89 |
| PGSC0003DMT400008972 | Potato | cytosol | 2.34 | 2.03 |
| PGSC0003DMT400041848 | Potato | nucleus | 0.78 | 1.27 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400038248 | EnsemblPlantsGene:PGSC0003DMG400014757 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 |
| PANTHER:PTHR31301:SF14 | PFAM:PF03195 | PFscan:PS50891 | PGSC:PGSC0003DMG400014757 | UniParc:UPI000294902A | UniProt:M1B6J0 |
| MapMan:15.5.24 | : | : | : | : | : |
Description
LOB domain protein 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400014757]
Coordinates
chr1:-:17365385..17366353
Molecular Weight (calculated)
14533.2 Da
IEP (calculated)
5.880
GRAVY (calculated)
-0.293
Length
128 amino acids
Sequence
(BLAST)
(BLAST)
001: MKFIVVHKIF GASNIIKLLQ ELPTTQRADA VQSLVYEANA RMRDPIYGSA GVISHLHDQM TKLQAQVALA QAHISNLQSQ NANLMTLIPK QQSLSDHYYP
101: FQDSTPLSYD DDTDIWHLGE TTWESFWS
101: FQDSTPLSYD DDTDIWHLGE TTWESFWS
001: MESKSDASVA TTPIISSSSS PPPSLSPRVV LSPCAACKIL RRRCAERCVL APYFPPTDPA KFTIAHRVFG ASNIIKFLQE LPESQRTDAV NSMVYEAEAR
101: IRDPVYGCAG AIYHLQRQVS ELQAQLAKAQ VEMVNMQFQR SNLLELIYNM DQQQKQEQDN MSFESNDLGF LEDKSNTNSS MLWWDPLWTC
101: IRDPVYGCAG AIYHLQRQVS ELQAQLAKAQ VEMVNMQFQR SNLLELIYNM DQQQKQEQDN MSFESNDLGF LEDKSNTNSS MLWWDPLWTC
Arabidopsis Description
LBD1LBD1 [Source:UniProtKB/TrEMBL;Acc:A0A178WM56]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.