Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g071660.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 93.14 | 80.3 |
| VIT_17s0000g09010.t01 | Wine grape | plastid | 68.0 | 64.67 |
| KRH54338 | Soybean | plastid | 67.43 | 63.78 |
| KRH63606 | Soybean | plastid | 65.71 | 63.19 |
| KRH03242 | Soybean | nucleus, plastid | 68.0 | 62.96 |
| PGSC0003DMT400046644 | Potato | nucleus, plastid | 68.57 | 62.83 |
| PGSC0003DMT400032875 | Potato | plastid | 55.43 | 61.78 |
| CDY48125 | Canola | plastid | 61.14 | 60.8 |
| CDY16738 | Canola | plastid | 60.57 | 60.23 |
| KRH57118 | Soybean | plastid | 67.43 | 59.9 |
| CDY69697 | Canola | plastid | 61.14 | 59.12 |
| CDY68853 | Canola | plastid | 61.14 | 59.12 |
| Bra038606.1-P | Field mustard | plastid | 61.14 | 59.12 |
| Bra035860.1-P | Field mustard | plastid | 58.29 | 57.95 |
| AT5G63090.3 | Thale cress | plastid | 60.0 | 56.45 |
| PGSC0003DMT400017805 | Potato | plastid | 52.57 | 54.76 |
| PGSC0003DMT400002549 | Potato | plastid | 48.57 | 44.97 |
| PGSC0003DMT400054637 | Potato | cytosol, nucleus, plastid | 38.29 | 41.61 |
| Os01t0169400-01 | Rice | plastid | 57.71 | 40.24 |
| PGSC0003DMT400078256 | Potato | mitochondrion, nucleus, plastid | 39.43 | 39.88 |
| PGSC0003DMT400061511 | Potato | mitochondrion | 38.29 | 39.18 |
| Zm00001d039694_P001 | Maize | plastid | 58.29 | 39.08 |
| PGSC0003DMT400022286 | Potato | cytosol, mitochondrion, nucleus, plastid | 37.71 | 38.6 |
| TraesCS3A01G093200.1 | Wheat | plastid | 56.57 | 38.52 |
| PGSC0003DMT400061283 | Potato | mitochondrion, nucleus | 37.14 | 38.46 |
| TraesCS3D01G093500.1 | Wheat | plastid | 56.0 | 38.13 |
| TraesCS3B01G108500.1 | Wheat | plastid | 56.0 | 38.13 |
| EES00235 | Sorghum | plastid | 58.29 | 38.06 |
| HORVU3Hr1G016690.1 | Barley | plastid | 57.14 | 36.1 |
| PGSC0003DMT400010597 | Potato | cytosol, nucleus, plastid | 34.86 | 35.26 |
| PGSC0003DMT400052995 | Potato | plastid | 37.14 | 32.34 |
| PGSC0003DMT400019410 | Potato | plastid | 33.71 | 29.8 |
| PGSC0003DMT400038248 | Potato | nucleus | 21.71 | 29.69 |
| PGSC0003DMT400078265 | Potato | cytosol, nucleus, plastid | 37.14 | 29.28 |
| PGSC0003DMT400065346 | Potato | plastid | 34.86 | 29.19 |
| PGSC0003DMT400065297 | Potato | plastid | 33.71 | 27.31 |
| PGSC0003DMT400002013 | Potato | nucleus | 44.0 | 26.83 |
| PGSC0003DMT400002011 | Potato | nucleus | 42.86 | 26.04 |
| PGSC0003DMT400025959 | Potato | nucleus | 43.43 | 24.28 |
| PGSC0003DMT400074783 | Potato | mitochondrion | 36.0 | 22.99 |
| PGSC0003DMT400041848 | Potato | nucleus | 4.57 | 10.13 |
| PGSC0003DMT400008972 | Potato | cytosol | 1.71 | 2.03 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400069646 | EnsemblPlantsGene:PGSC0003DMG400027078 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 |
| PANTHER:PTHR31301:SF35 | PFAM:PF03195 | PFscan:PS50891 | PGSC:PGSC0003DMG400027078 | SEG:seg | UniParc:UPI000295A8A5 |
| UniProt:M1CKU6 | MapMan:15.5.24 | : | : | : | : |
Description
Protein LATERAL ORGAN BOUNDARIES [Source:PGSC_GENE;Acc:PGSC0003DMG400027078]
Coordinates
chr6:+:52494929..52495635
Molecular Weight (calculated)
19247.6 Da
IEP (calculated)
6.777
GRAVY (calculated)
-0.485
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSCYNSP CAACKFLRRK CLPGCIFAPH FPPEEPHKFA NVHKIFGASN VTKLLNEVLP DQREDAVNTL AYEAEARVRD PVYGCVSAIT FLQRQVERLE
101: KELDAAKADL MRYASNCNDV SPPLIGSHHH EEENIGSTLH NMAISRRMGY DHHGGGGGSY FPWNDQNTSG GGGNI
101: KELDAAKADL MRYASNCNDV SPPLIGSHHH EEENIGSTLH NMAISRRMGY DHHGGGGGSY FPWNDQNTSG GGGNI
001: MASSSNSYNS PCAACKFLRR KCMPGCIFAP YFPPEEPHKF ANVHKIFGAS NVTKLLNELL PHQREDAVNS LAYEAEARVR DPVYGCVGAI SYLQRQVHRL
101: QKELDAANAD LAHYGLSTSA AGAPGNVVDL VFQPQPLPSQ QLPPLNPVYR LSGASPVMNQ MPRGTGGSYG TFLPWNNGHD QQGGNM
101: QKELDAANAD LAHYGLSTSA AGAPGNVVDL VFQPQPLPSQ QLPPLNPVYR LSGASPVMNQ MPRGTGGSYG TFLPWNNGHD QQGGNM
Arabidopsis Description
LOBLOB [Source:UniProtKB/TrEMBL;Acc:A0A178UKE6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.