Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g007390.2.1 | Tomato | nucleus | 92.04 | 77.73 |
| PGSC0003DMT400078265 | Potato | cytosol, nucleus, plastid | 65.67 | 59.46 |
| GSMUA_AchrUn_... | Banana | plastid | 52.74 | 57.61 |
| GSMUA_Achr11P... | Banana | cytosol | 57.71 | 53.46 |
| HORVU1Hr1G024490.1 | Barley | cytosol, mitochondrion, nucleus | 43.78 | 53.01 |
| KRH17149 | Soybean | cytosol, mitochondrion, nucleus | 64.18 | 51.81 |
| GSMUA_Achr5P07460_001 | Banana | nucleus | 53.73 | 51.67 |
| VIT_06s0004g07790.t01 | Wine grape | cytosol | 58.21 | 51.09 |
| KRH72805 | Soybean | cytosol, mitochondrion, nucleus | 63.68 | 50.59 |
| GSMUA_Achr7P22200_001 | Banana | nucleus | 51.74 | 49.29 |
| Zm00001d009823_P001 | Maize | plastid | 50.75 | 46.58 |
| PGSC0003DMT400054637 | Potato | cytosol, nucleus, plastid | 36.82 | 45.96 |
| PGSC0003DMT400032875 | Potato | plastid | 34.33 | 43.95 |
| TraesCS1D01G113100.1 | Wheat | nucleus | 51.24 | 43.83 |
| TraesCS1B01G131900.2 | Wheat | nucleus | 51.24 | 43.46 |
| PGSC0003DMT400078256 | Potato | mitochondrion, nucleus, plastid | 36.82 | 42.77 |
| Os05t0165450-00 | Rice | extracellular | 52.74 | 42.74 |
| TraesCS1A01G111700.1 | Wheat | nucleus | 50.25 | 42.62 |
| Zm00001d043036_P001 | Maize | cytosol | 49.25 | 41.77 |
| PGSC0003DMT400061511 | Potato | mitochondrion | 35.32 | 41.52 |
| PGSC0003DMT400061283 | Potato | mitochondrion, nucleus | 34.83 | 41.42 |
| OQU87769 | Sorghum | cytosol | 51.24 | 41.37 |
| PGSC0003DMT400017805 | Potato | plastid | 34.33 | 41.07 |
| PGSC0003DMT400074783 | Potato | mitochondrion | 55.22 | 40.51 |
| TraesCS3D01G340000.1 | Wheat | cytosol | 49.75 | 40.32 |
| TraesCS3A01G346300.1 | Wheat | cytosol | 49.75 | 40.0 |
| PGSC0003DMT400022286 | Potato | cytosol, mitochondrion, nucleus, plastid | 33.83 | 39.77 |
| Os01t0825000-01 | Rice | cytosol | 48.76 | 39.04 |
| PGSC0003DMT400046644 | Potato | nucleus, plastid | 35.32 | 37.17 |
| PGSC0003DMT400069646 | Potato | plastid | 32.34 | 37.14 |
| PGSC0003DMT400038248 | Potato | nucleus | 23.38 | 36.72 |
| PGSC0003DMT400010597 | Potato | cytosol, nucleus, plastid | 31.34 | 36.42 |
| OQU77508 | Sorghum | cytosol, nucleus, plastid | 52.74 | 34.53 |
| PGSC0003DMT400002549 | Potato | plastid | 32.34 | 34.39 |
| PGSC0003DMT400019410 | Potato | plastid | 33.33 | 33.84 |
| TraesCS3B01G378100.1 | Wheat | plastid | 48.76 | 33.56 |
| PGSC0003DMT400065346 | Potato | plastid | 33.33 | 32.06 |
| PGSC0003DMT400065297 | Potato | plastid | 33.33 | 31.02 |
| HORVU3Hr1G088440.1 | Barley | plastid | 49.75 | 30.3 |
| PGSC0003DMT400002013 | Potato | nucleus | 31.84 | 22.3 |
| PGSC0003DMT400002011 | Potato | nucleus | 31.84 | 22.22 |
| PGSC0003DMT400025959 | Potato | nucleus | 32.34 | 20.77 |
| PGSC0003DMT400041848 | Potato | nucleus | 1.0 | 2.53 |
| PGSC0003DMT400008972 | Potato | cytosol | 1.49 | 2.03 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400052995 | EnsemblPlantsGene:PGSC0003DMG400020562 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 |
| PANTHER:PTHR31301:SF28 | PFAM:PF03195 | PFscan:PS50891 | PGSC:PGSC0003DMG400020562 | SEG:seg | UniParc:UPI0002947FF8 |
| UniProt:M1BU90 | MapMan:15.5.24 | : | : | : | : |
Description
LOB domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400020562]
Coordinates
chr6:+:2897527..2898866
Molecular Weight (calculated)
21719.8 Da
IEP (calculated)
7.269
GRAVY (calculated)
-0.209
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPSCTKLNT SIPCAACKLL RRKCAEECPF SPYFSPHEPQ KFAAVHKVFG ASNVSKLLME VPESQRADAA NSLVYEANVR LRDPIYGCMG TISTLNQQVQ
101: SLQAELNATR AEILRYKYRE ATNSLIIAST GIGATVAVAE LPQAPSTPTY PPRPPPPQDS FGVVIPSCSS PPSTHESVYA TPSSGANFSV IPNNNIVPYF
201: D
101: SLQAELNATR AEILRYKYRE ATNSLIIAST GIGATVAVAE LPQAPSTPTY PPRPPPPQDS FGVVIPSCSS PPSTHESVYA TPSSGANFSV IPNNNIVPYF
201: D
001: MIGNNREGFG EYYETVKKIK KDPAFETTTD HAVMGIRRHV AVPPGTTLNT VTPCAACKLL RRRCAEECPF SPYFSPHEPH KFAAVHKVFG ASNVSKMLLE
101: VGESQRGDAA NSLVYEANLR LRDPIYGCMG AISALQHHIQ SLQSELTTVR TEILRHKYQE ATTITSLQNN FNSTTTTSSV SCDQHALASA ILLPPPPPPP
201: PTPRPPRLLS SQPAPPPTPP VSLPSPSMVV SSSSSSNSSA TNSMYNPPPS STAGYSNSLS SDNNVHYFD
101: VGESQRGDAA NSLVYEANLR LRDPIYGCMG AISALQHHIQ SLQSELTTVR TEILRHKYQE ATTITSLQNN FNSTTTTSSV SCDQHALASA ILLPPPPPPP
201: PTPRPPRLLS SQPAPPPTPP VSLPSPSMVV SSSSSSNSSA TNSMYNPPPS STAGYSNSLS SDNNVHYFD
Arabidopsis Description
LBD13LBD13 [Source:UniProtKB/TrEMBL;Acc:A0A178VRU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.