Factsheet for TraesCS3A01G346300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G340000.1	Wheat	cytosol	96.4	97.18
TraesCS3B01G378100.1	Wheat	plastid	94.0	80.48
Zm00001d043036_P001	Maize	cytosol	68.0	71.73
Os01t0825000-01	Rice	cytosol	72.0	71.71
OQU87769	Sorghum	cytosol	70.4	70.68
HORVU3Hr1G088440.1	Barley	plastid	90.0	68.18
GSMUA_Achr11P...	Banana	cytosol	54.8	63.13
GSMUA_Achr5P07460_001	Banana	nucleus	51.2	61.24
VIT_13s0067g02380.t01	Wine grape	nucleus	54.0	60.27
GSMUA_AchrUn_...	Banana	plastid	44.0	59.78
GSMUA_Achr7P22200_001	Banana	nucleus	50.4	59.72
KRH53776	Soybean	nucleus	50.4	56.76
KRH64170	Soybean	nucleus	50.4	56.76
Solyc06g050430.2.1	Tomato	nucleus	49.2	56.68
VIT_06s0004g07790.t01	Wine grape	cytosol	50.4	55.02
TraesCS1A01G111700.1	Wheat	nucleus	49.2	51.9
Solyc06g082430.1.1	Tomato	cytosol, nucleus, plastid	47.2	50.86
PGSC0003DMT400052995	Potato	plastid	40.0	49.75
Solyc06g007390.2.1	Tomato	nucleus	46.8	49.16
PGSC0003DMT400078265	Potato	cytosol, nucleus, plastid	43.2	48.65
KRH17149	Soybean	cytosol, mitochondrion, nucleus	46.4	46.59
KRH72805	Soybean	cytosol, mitochondrion, nucleus	46.8	46.25
CDY02059	Canola	mitochondrion	42.8	45.34
CDY10726	Canola	mitochondrion	42.4	44.92
Bra018320.1-P	Field mustard	mitochondrion	42.4	44.92
TraesCS5A01G152200.1	Wheat	plastid	30.8	43.5
AT2G30340.2	Thale cress	nucleus	46.0	42.75
TraesCS4A01G297500.1	Wheat	plastid	28.0	40.46
TraesCS1A01G222300.1	Wheat	mitochondrion	30.0	39.68
PGSC0003DMT400074783	Potato	mitochondrion	42.8	39.05
TraesCS1A01G062200.1	Wheat	cytosol, plastid	28.4	34.47
TraesCS4A01G107300.1	Wheat	plastid	28.0	31.39
TraesCS3A01G093200.1	Wheat	plastid	29.2	28.4
TraesCS4A01G235100.1	Wheat	nucleus	29.2	25.35
TraesCS3A01G402300.1	Wheat	plastid	26.0	25.1
TraesCS1A01G260000.1	Wheat	plastid	25.6	24.24

Protein Annotations

EnsemblPlants:TraesCS3A01G346300.1	EnsemblPlantsGene:TraesCS3A01G346300	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31301
PANTHER:PTHR31301:SF20	PFAM:PF03195	PFscan:PS50891	SEG:seg	MapMan:15.5.24	:

Description

No Description!

Coordinates

chr3A:+:595644117..595645278

Molecular Weight (calculated)

26357.3 Da

IEP (calculated)

6.506

GRAVY (calculated)

-0.049

Length

250 amino acids

Sequence
(BLAST)

001: MSTERERLDE IGKKIKREPD PTAAAAIAGV VVAVSPTEHH VPRRLGLVGP GIVGAPNIAT PCAACKLLRR RCAHECPFAP YFSPHEPHKF AAVHKVFGAS
101: NVSKMLLEVP EAERADAASS LVYEANLRLR DPVYGCMGAI SMLQQQVNAL EAELQAVRAE IFKHRYRQAG VGVGAAHLIV DDDVSAAAAG GFRAPATSLV
201: HTADVVSVAE AGQEVATMPS TATATAYAAG QPSSTDYSSL DTSEHDAYFG

Best Arabidopsis Sequence Match ( AT2G40470.1 )
(BLAST)

001: MSRERERFEE IGKKIKREAD AWPHQMAGIR RPMSGPPGTL NTITPCAACK LLRRRCAQEC PFSPYFSPHE PHKFASVHKV FGASNVSKML MEVPESQRAD
101: AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQALQAELTA VRSEILKYKQ REAVATLIVP SNSQVAGFHN SGGVSVIAPP PQRPTTPPQP TTAHPPSPSS
201: CVFSQPTTRD LEYGNIESEN NYFG

Arabidopsis Description

LBD15LOB domain-containing protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q8L5T5]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.