Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G40470.1 | Thale cress | cytosol, nucleus, plastid | 70.97 | 68.75 |
| Bra004572.1-P | Field mustard | cytosol, mitochondrion, nucleus | 70.05 | 68.16 |
| CDX93178 | Canola | cytosol, nucleus, plastid | 70.51 | 67.4 |
| CDY67958 | Canola | plastid | 61.29 | 67.17 |
| CDY23903 | Canola | plastid | 61.29 | 67.17 |
| Bra000188.1-P | Field mustard | plastid | 61.29 | 66.83 |
| GSMUA_Achr11P... | Banana | cytosol | 64.98 | 64.98 |
| CDY06988 | Canola | plastid | 59.91 | 64.68 |
| Bra016992.1-P | Field mustard | plastid | 59.91 | 64.68 |
| PGSC0003DMT400074783 | Potato | mitochondrion | 79.26 | 62.77 |
| GSMUA_Achr5P07460_001 | Banana | nucleus | 60.37 | 62.68 |
| GSMUA_Achr7P22200_001 | Banana | nucleus | 60.37 | 62.09 |
| HORVU1Hr1G024490.1 | Barley | cytosol, mitochondrion, nucleus | 47.47 | 62.05 |
| CDY07604 | Canola | mitochondrion | 65.9 | 61.64 |
| Solyc06g082430.1.1 | Tomato | cytosol, nucleus, plastid | 65.9 | 61.64 |
| CDY24903 | Canola | mitochondrion | 65.44 | 61.47 |
| GSMUA_AchrUn_... | Banana | plastid | 51.15 | 60.33 |
| Solyc06g007390.2.1 | Tomato | nucleus | 63.13 | 57.56 |
| Zm00001d043036_P001 | Maize | cytosol | 56.22 | 51.48 |
| TraesCS1D01G113100.1 | Wheat | nucleus | 54.84 | 50.64 |
| TraesCS3D01G340000.1 | Wheat | cytosol | 57.14 | 50.0 |
| Os01t0825000-01 | Rice | cytosol | 57.6 | 49.8 |
| TraesCS1B01G131900.2 | Wheat | nucleus | 54.38 | 49.79 |
| Zm00001d009823_P001 | Maize | plastid | 50.23 | 49.77 |
| TraesCS1A01G111700.1 | Wheat | nucleus | 53.92 | 49.37 |
| TraesCS3A01G346300.1 | Wheat | cytosol | 56.68 | 49.2 |
| OQU87769 | Sorghum | cytosol | 55.3 | 48.19 |
| Solyc02g069440.2.1 | Tomato | nucleus | 35.48 | 47.83 |
| Os05t0165450-00 | Rice | extracellular | 53.92 | 47.18 |
| Solyc06g050950.2.1 | Tomato | mitochondrion, nucleus, plastid | 36.41 | 46.2 |
| Solyc11g045530.1.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 36.41 | 46.2 |
| Solyc02g086480.1.1 | Tomato | plastid | 30.88 | 44.97 |
| Solyc06g082310.2.1 | Tomato | mitochondrion, nucleus, plastid | 35.94 | 44.83 |
| Solyc12g100150.1.1 | Tomato | mitochondrion | 33.64 | 43.45 |
| TraesCS3B01G378100.1 | Wheat | plastid | 56.68 | 42.12 |
| Solyc04g050010.1.1 | Tomato | cytosol | 30.88 | 40.61 |
| Solyc02g067800.2.1 | Tomato | plastid | 31.34 | 40.48 |
| OQU77508 | Sorghum | cytosol, nucleus, plastid | 57.14 | 40.39 |
| Solyc11g072470.1.1 | Tomato | plastid | 35.02 | 40.21 |
| Solyc03g063140.2.1 | Tomato | nucleus, plastid | 31.8 | 39.66 |
| Solyc01g044520.1.1 | Tomato | nucleus | 29.49 | 37.43 |
| Solyc03g112430.1.1 | Tomato | nucleus, plastid | 33.64 | 37.24 |
| HORVU3Hr1G088440.1 | Barley | plastid | 56.22 | 36.97 |
| Solyc06g005090.2.1 | Tomato | plastid | 32.26 | 35.35 |
| Solyc05g048740.2.1 | Tomato | nucleus, plastid | 33.64 | 33.95 |
| Solyc06g071660.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 29.95 | 32.02 |
| Solyc11g008830.1.1 | Tomato | plastid | 32.26 | 30.43 |
| Solyc06g075330.1.1 | Tomato | golgi, nucleus, plastid | 28.57 | 25.62 |
| Solyc02g090410.2.1 | Tomato | mitochondrion, plastid | 33.64 | 23.17 |
| Solyc02g065150.1.1 | Tomato | nucleus | 30.41 | 22.68 |
Protein Annotations
| EnsemblPlants:Solyc06g050430.2.1 | EnsemblPlantsGene:Solyc06g050430.2 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 | PANTHER:PTHR31301:SF2 | PFAM:PF03195 |
| PFscan:PS50891 | SEG:seg | UniParc:UPI0002766B14 | UniProt:K4C5I7 | MapMan:15.5.24 | : |
Description
LOB domain-containing protein 15 [Source:Projected from Arabidopsis thaliana (AT2G40470) UniProtKB/Swiss-Prot;Acc:Q8L5T5]
Coordinates
chr6:-:33029858..33031083
Molecular Weight (calculated)
24038.7 Da
IEP (calculated)
8.192
GRAVY (calculated)
-0.359
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRERERYEE IGKKIKREAD DYSQMGRRYM LVPPGNTTLN TVTPCAACKL LRRRCAQECP FSPYFSPHEP QKFASVHKVF GASNVSKMLM EVPESQRADT
101: ANSLVYEANV RLRDPVYGCM GAISSLQQQV QALQAELNVI RAEIIKYNTT TLIPSLLSSG AVSIATVLPP PPQPQPPVTI LPSTISSTHD ATMYTQPSTT
201: TTEFSNISSE NNISYFG
101: ANSLVYEANV RLRDPVYGCM GAISSLQQQV QALQAELNVI RAEIIKYNTT TLIPSLLSSG AVSIATVLPP PPQPQPPVTI LPSTISSTHD ATMYTQPSTT
201: TTEFSNISSE NNISYFG
001: MSRERERFEE IGKKIKREAD AWPHQMAGIR RPMSGPPGTL NTITPCAACK LLRRRCAQEC PFSPYFSPHE PHKFASVHKV FGASNVSKML MEVPESQRAD
101: AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQALQAELTA VRSEILKYKQ REAVATLIVP SNSQVAGFHN SGGVSVIAPP PQRPTTPPQP TTAHPPSPSS
201: CVFSQPTTRD LEYGNIESEN NYFG
101: AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQALQAELTA VRSEILKYKQ REAVATLIVP SNSQVAGFHN SGGVSVIAPP PQRPTTPPQP TTAHPPSPSS
201: CVFSQPTTRD LEYGNIESEN NYFG
Arabidopsis Description
LBD15LOB domain-containing protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q8L5T5]
SUBAcon: [cytosol,nucleus,plastid]
SUBAcon: [cytosol,nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.