Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400038248 | Potato | nucleus | 66.08 | 88.28 |
| VIT_13s0019g03760.t01 | Wine grape | plastid | 41.52 | 51.82 |
| Solyc04g050010.1.1 | Tomato | cytosol | 46.78 | 48.48 |
| Solyc11g072470.1.1 | Tomato | plastid | 51.46 | 46.56 |
| VIT_13s0019g03720.t01 | Wine grape | nucleus, plastid | 42.11 | 44.44 |
| VIT_13s0019g03750.t01 | Wine grape | plastid | 43.27 | 42.53 |
| VIT_13s0019g03710.t01 | Wine grape | nucleus, plastid | 40.94 | 42.42 |
| Solyc06g005090.2.1 | Tomato | plastid | 49.12 | 42.42 |
| VIT_13s0019g03780.t01 | Wine grape | plastid | 42.69 | 42.2 |
| Solyc02g086480.1.1 | Tomato | plastid | 35.67 | 40.94 |
| Solyc02g069440.2.1 | Tomato | nucleus | 38.01 | 40.37 |
| Solyc11g045530.1.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 40.35 | 40.35 |
| Solyc06g082310.2.1 | Tomato | mitochondrion, nucleus, plastid | 40.94 | 40.23 |
| Solyc06g050950.2.1 | Tomato | mitochondrion, nucleus, plastid | 39.18 | 39.18 |
| Solyc05g048740.2.1 | Tomato | nucleus, plastid | 48.54 | 38.6 |
| Solyc12g100150.1.1 | Tomato | mitochondrion | 37.43 | 38.1 |
| Solyc03g063140.2.1 | Tomato | nucleus, plastid | 36.84 | 36.21 |
| Solyc02g067800.2.1 | Tomato | plastid | 35.09 | 35.71 |
| Solyc03g112430.1.1 | Tomato | nucleus, plastid | 38.6 | 33.67 |
| Solyc06g075330.1.1 | Tomato | golgi, nucleus, plastid | 42.11 | 29.75 |
| Solyc06g050430.2.1 | Tomato | nucleus | 37.43 | 29.49 |
| Solyc06g071660.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 33.33 | 28.08 |
| Solyc11g008830.1.1 | Tomato | plastid | 36.26 | 26.96 |
| Solyc06g082430.1.1 | Tomato | cytosol, nucleus, plastid | 36.26 | 26.72 |
| Solyc06g007390.2.1 | Tomato | nucleus | 36.26 | 26.05 |
| Solyc02g065150.1.1 | Tomato | nucleus | 35.67 | 20.96 |
| Solyc02g090410.2.1 | Tomato | mitochondrion, plastid | 36.84 | 20.0 |
Protein Annotations
| EnsemblPlants:Solyc01g044520.1.1 | EnsemblPlantsGene:Solyc01g044520.1 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 |
| PANTHER:PTHR31301:SF7 | PFAM:PF03195 | PFscan:PS50891 | SEG:seg | UniParc:UPI0002763346 | UniProt:K4AVD2 |
| MapMan:15.5.24 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1:+:44191088..44193070
Molecular Weight (calculated)
19383.0 Da
IEP (calculated)
7.501
GRAVY (calculated)
-0.381
Length
171 amino acids
Sequence
(BLAST)
(BLAST)
001: MADYSSCSTE NRNLFTPCAA CKFLRRRCLE DCLLKPYFPP NEPMKFIVAH KIFGASNIIK VLKDLPATQR GDAVNSLVYE ANARMRDPIY GSAGVISHLH
101: DQMTKLQAQV ALAQAQISNL QSQNANLMTL IPKQQSLSDH HYKFQNSTPL SYDDNTEIWH LGDTTWDSFW S
101: DQMTKLQAQV ALAQAQISNL QSQNANLMTL IPKQQSLSDH HYKFQNSTPL SYDDNTEIWH LGDTTWDSFW S
001: MESKSDASVA TTPIISSSSS PPPSLSPRVV LSPCAACKIL RRRCAERCVL APYFPPTDPA KFTIAHRVFG ASNIIKFLQE LPESQRTDAV NSMVYEAEAR
101: IRDPVYGCAG AIYHLQRQVS ELQAQLAKAQ VEMVNMQFQR SNLLELIYNM DQQQKQEQDN MSFESNDLGF LEDKSNTNSS MLWWDPLWTC
101: IRDPVYGCAG AIYHLQRQVS ELQAQLAKAQ VEMVNMQFQR SNLLELIYNM DQQQKQEQDN MSFESNDLGF LEDKSNTNSS MLWWDPLWTC
Arabidopsis Description
LBD1LBD1 [Source:UniProtKB/TrEMBL;Acc:A0A178WM56]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.