Factsheet for Solyc05g048740.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g050010.1.1	Tomato	cytosol	57.67	75.15
Solyc11g072470.1.1	Tomato	plastid	55.35	62.96
AT1G07900.1	Thale cress	plastid	54.42	61.58
Solyc06g005090.2.1	Tomato	plastid	54.88	59.6
CDY22713	Canola	plastid	52.56	59.16
CDY06285	Canola	nucleus, plastid	51.63	58.42
CDY15755	Canola	plastid	55.81	55.3
CDY04570	Canola	plastid	55.81	55.05
CDX77182	Canola	plastid	55.35	54.84
CDY62454	Canola	plastid	55.35	54.84
Bra018675.1-P	Field mustard	plastid	52.09	54.37
Bra031599.1-P	Field mustard	nucleus, plastid	51.63	53.62
CDY31207	Canola	plastid	52.56	52.31
Bra035698.1-P	Field mustard	plastid	55.35	51.97
AT2G28500.1	Thale cress	plastid	55.81	51.72
Bra011942.1-P	Field mustard	plastid	55.35	51.07
CDX83290	Canola	plastid	53.49	49.78
Bra000491.1-P	Field mustard	plastid	53.49	49.78
CDX93609	Canola	nucleus	52.09	49.78
Solyc01g044520.1.1	Tomato	nucleus	38.6	48.54
CDX95115	Canola	plastid	51.16	48.25
Solyc02g069440.2.1	Tomato	nucleus	35.81	47.83
Solyc11g045530.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	37.21	46.78
Solyc06g082310.2.1	Tomato	mitochondrion, nucleus, plastid	37.67	46.55
Solyc06g050950.2.1	Tomato	mitochondrion, nucleus, plastid	35.35	44.44
Solyc06g075330.1.1	Tomato	golgi, nucleus, plastid	48.37	42.98
Solyc02g086480.1.1	Tomato	plastid	28.84	41.61
Solyc12g100150.1.1	Tomato	mitochondrion	32.09	41.07
Solyc02g067800.2.1	Tomato	plastid	29.77	38.1
Solyc03g063140.2.1	Tomato	nucleus, plastid	30.23	37.36
Solyc06g050430.2.1	Tomato	nucleus	33.95	33.64
Solyc03g112430.1.1	Tomato	nucleus, plastid	29.77	32.65
Solyc06g082430.1.1	Tomato	cytosol, nucleus, plastid	33.02	30.6
Solyc06g007390.2.1	Tomato	nucleus	33.02	29.83
Solyc11g008830.1.1	Tomato	plastid	31.16	29.13
Solyc06g071660.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	27.44	29.06
Solyc02g065150.1.1	Tomato	nucleus	30.7	22.68
Solyc02g090410.2.1	Tomato	mitochondrion, plastid	30.23	20.63

Protein Annotations

EnsemblPlants:Solyc05g048740.2.1	EnsemblPlantsGene:Solyc05g048740.2	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31301
PANTHER:PTHR31301:SF14	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI0002766CAC	UniProt:K4C106
MapMan:15.5.24	:	:	:	:	:

Description

No Description!

Coordinates

chr5:+:59306002..59307395

Molecular Weight (calculated)

23678.2 Da

IEP (calculated)

4.835

GRAVY (calculated)

-0.140

Length

215 amino acids

Sequence
(BLAST)

001: MECSDHKTTT TISSMNSSSS TFASTISTTP TSGLLSPKSS ILLSTPPMNV VLSPCAACKI LRRRCVEKCV LAPYFPPTDP LKFTIAHRVF GASNIIKMLQ
101: ELPEEQRVDA VNSMVYEANA RIRDPVYGCA GAICQLQKQI SELQAEFAKA QAEILNLKCQ NSNLLALVCM EVSENSSNSL LLSSDHINDY ENNNDNTSMF
201: LEDNNLYGAW EPLWT

Best Arabidopsis Sequence Match ( AT1G07900.1 )
(BLAST)

001: MESKSDASVA TTPIISSSSS PPPSLSPRVV LSPCAACKIL RRRCAERCVL APYFPPTDPA KFTIAHRVFG ASNIIKFLQE LPESQRTDAV NSMVYEAEAR
101: IRDPVYGCAG AIYHLQRQVS ELQAQLAKAQ VEMVNMQFQR SNLLELIYNM DQQQKQEQDN MSFESNDLGF LEDKSNTNSS MLWWDPLWTC

Arabidopsis Description

LBD1LBD1 [Source:UniProtKB/TrEMBL;Acc:A0A178WM56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.