Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 4
- plastid 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400061283 | Potato | mitochondrion, nucleus | 87.5 | 86.98 |
| Solyc11g045530.1.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 63.69 | 62.57 |
| VIT_19s0027g01120.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 61.31 | 60.59 |
| KRH43747 | Soybean | mitochondrion | 60.71 | 57.63 |
| Solyc02g069440.2.1 | Tomato | nucleus | 54.76 | 57.14 |
| KRH13706 | Soybean | mitochondrion | 59.52 | 56.18 |
| AT1G16530.1 | Thale cress | mitochondrion | 51.79 | 52.73 |
| CDX81767 | Canola | cytosol, nucleus, plastid | 50.6 | 51.83 |
| Bra026042.1-P | Field mustard | mitochondrion | 50.0 | 51.53 |
| CDY66794 | Canola | mitochondrion | 50.0 | 51.53 |
| CDY40054 | Canola | mitochondrion | 49.4 | 50.92 |
| Bra026716.1-P | Field mustard | mitochondrion | 49.4 | 50.61 |
| GSMUA_Achr5P02190_001 | Banana | mitochondrion | 50.0 | 50.6 |
| GSMUA_Achr2P13170_001 | Banana | nucleus | 51.79 | 50.0 |
| CDY50999 | Canola | cytosol, mitochondrion, plastid | 48.81 | 50.0 |
| HORVU4Hr1G002480.2 | Barley | cytosol | 51.79 | 48.88 |
| Solyc06g082310.2.1 | Tomato | mitochondrion, nucleus, plastid | 50.6 | 48.85 |
| TraesCS4B01G016200.1 | Wheat | plastid | 50.6 | 48.57 |
| GSMUA_Achr7P00880_001 | Banana | cytosol, nucleus, plastid | 53.57 | 48.39 |
| TraesCS4A01G297500.1 | Wheat | plastid | 49.4 | 47.98 |
| Solyc06g050950.2.1 | Tomato | mitochondrion, nucleus, plastid | 48.21 | 47.37 |
| GSMUA_Achr4P32000_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 51.19 | 47.25 |
| Zm00001d013625_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 50.0 | 42.21 |
| EER93717 | Sorghum | plastid | 49.4 | 40.1 |
| Solyc02g086480.1.1 | Tomato | plastid | 35.12 | 39.6 |
| Solyc04g050010.1.1 | Tomato | cytosol | 38.69 | 39.39 |
| Zm00001d033466_P001 | Maize | plastid | 48.81 | 38.86 |
| Solyc03g063140.2.1 | Tomato | nucleus, plastid | 39.88 | 38.51 |
| Solyc11g072470.1.1 | Tomato | plastid | 42.86 | 38.1 |
| Solyc02g067800.2.1 | Tomato | plastid | 38.1 | 38.1 |
| Solyc01g044520.1.1 | Tomato | nucleus | 38.1 | 37.43 |
| Solyc06g005090.2.1 | Tomato | plastid | 42.26 | 35.86 |
| Solyc03g112430.1.1 | Tomato | nucleus, plastid | 39.88 | 34.18 |
| Solyc06g050430.2.1 | Tomato | nucleus | 43.45 | 33.64 |
| Solyc05g048740.2.1 | Tomato | nucleus, plastid | 41.07 | 32.09 |
| Solyc06g082430.1.1 | Tomato | cytosol, nucleus, plastid | 42.26 | 30.6 |
| Solyc06g071660.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 36.31 | 30.05 |
| Solyc11g008830.1.1 | Tomato | plastid | 40.48 | 29.57 |
| Solyc06g007390.2.1 | Tomato | nucleus | 41.67 | 29.41 |
| TraesCS4D01G014600.1 | Wheat | nucleus | 50.6 | 28.91 |
| Solyc06g075330.1.1 | Tomato | golgi, nucleus, plastid | 36.31 | 25.21 |
| Solyc02g065150.1.1 | Tomato | nucleus | 43.45 | 25.09 |
| Solyc02g090410.2.1 | Tomato | mitochondrion, plastid | 42.86 | 22.86 |
Protein Annotations
| EnsemblPlants:Solyc12g100150.1.1 | EnsemblPlantsGene:Solyc12g100150.1 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31301 | PANTHER:PTHR31301:SF7 |
| PFAM:PF03195 | PFscan:PS50891 | SEG:seg | UniParc:UPI000276AB70 | UniProt:K4DI36 | MapMan:15.5.24 |
Description
LOB domain-containing protein 3 [Source:Projected from Arabidopsis thaliana (AT1G16530) UniProtKB/Swiss-Prot;Acc:Q9SA51]
Coordinates
chr12:+:66986841..66987532
Molecular Weight (calculated)
18631.0 Da
IEP (calculated)
7.538
GRAVY (calculated)
-0.428
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MKESGGRKQG ATSPCAACKL LRRRCTQDCV FSPYFPSDEP HKFASVHKVF GASNVNKMIQ ELQEYQRGDA VSSMVYEANA RIKDPIYGCV GTISSLHHQI
101: EFLHTQLAIA QAELVHMKMQ QFSSMSGGGG TAANSPKNVW SPSSQHLQSE VYSEFEIYDS VQQPQINI
101: EFLHTQLAIA QAELVHMKMQ QFSSMSGGGG TAANSPKNVW SPSSQHLQSE VYSEFEIYDS VQQPQINI
001: MKESSRKQGA ASPCAACKLL RRRCAQDCVF SPYFPADEPQ KFANVHRVFG ASNVNKMLQE LPIHQRGDAV SSMVYEANAR VRDPVYGCVG AISSLQQQID
101: VLQAQLALAQ AEVVHLRVRQ STNFPGHGLC PDSPSSSGSP SSKQVSPQDN KGMFSHMDIV DEASLGESMW SC
101: VLQAQLALAQ AEVVHLRVRQ STNFPGHGLC PDSPSSSGSP SSKQVSPQDN KGMFSHMDIV DEASLGESMW SC
Arabidopsis Description
LBD4LOB domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHE9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.