Factsheet for Solyc02g090410.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

nucleus 4
mitochondrion 4
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc09g010840.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66870.1	Solyc09g010840.1.1	AT2G37630.1	16243907

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400025959	Potato	nucleus	91.75	92.33
Solyc02g065150.1.1	Tomato	nucleus	65.08	70.45
VIT_00s1247g00010.t01	Wine grape	nucleus	53.02	69.29
VIT_07s0197g00030.t01	Wine grape	nucleus	50.16	64.49
VIT_07s0197g00020.t01	Wine grape	nucleus	58.1	62.67
VIT_07s0197g00040.t01	Wine grape	cytosol, nucleus, plastid	55.56	58.53
VIT_16s0022g02050.t01	Wine grape	cytosol, mitochondrion, nucleus	52.38	57.49
Solyc02g086480.1.1	Tomato	plastid	24.44	51.68
Solyc03g063140.2.1	Tomato	nucleus, plastid	28.25	51.15
KRH62409	Soybean	nucleus	34.29	50.94
KRH76950	Soybean	nucleus	48.89	50.66
KRH53127	Soybean	nucleus	32.38	50.0
AT5G66870.1	Thale cress	nucleus	48.57	48.88
KRH28509	Soybean	nucleus	47.3	48.38
Solyc02g067800.2.1	Tomato	plastid	25.08	47.02
Solyc11g008830.1.1	Tomato	plastid	32.7	44.78
CDY01457	Canola	nucleus, plastid	47.94	44.67
CDY12784	Canola	nucleus, plastid	47.62	44.64
Bra012112.1-P	Field mustard	nucleus, plastid	47.62	44.38
CDY49845	Canola	nucleus, plastid	43.81	44.23
KRH57745	Soybean	nucleus	38.73	44.2
Solyc02g069440.2.1	Tomato	nucleus	22.22	43.48
CDY52150	Canola	nucleus, plastid	43.17	43.04
Solyc12g100150.1.1	Tomato	mitochondrion	22.86	42.86
Solyc11g045530.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	23.17	42.69
TraesCS4B01G079900.1	Wheat	mitochondrion, nucleus, plastid	38.41	42.61
GSMUA_Achr6P04670_001	Banana	mitochondrion	38.73	42.36
Solyc03g112430.1.1	Tomato	nucleus, plastid	26.35	42.35
TraesCS4D01G078800.1	Wheat	mitochondrion, nucleus, plastid	38.1	42.25
Zm00001d033335_P001	Maize	plastid	37.46	41.99
Solyc06g082310.2.1	Tomato	mitochondrion, nucleus, plastid	22.86	41.38
TraesCS4A01G235100.1	Wheat	nucleus	37.78	41.32
EER93817	Sorghum	plastid	38.41	40.74
HORVU4Hr1G013630.2	Barley	nucleus	38.41	40.2
Zm00001d013732_P001	Maize	plastid	38.1	40.13
Solyc04g050010.1.1	Tomato	cytosol	20.95	40.0
Solyc06g050950.2.1	Tomato	mitochondrion, nucleus, plastid	21.59	39.77
CDX81360	Canola	plastid	40.63	38.21
Solyc06g071660.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	24.13	37.44
Bra032153.1-P	Field mustard	mitochondrion, nucleus	36.51	37.34
CDX68120	Canola	mitochondrion, nucleus	36.51	37.34
CDX89590	Canola	mitochondrion, nucleus	36.51	37.34
AT2G23660.2	Thale cress	mitochondrion, nucleus	36.83	37.3
Solyc01g044520.1.1	Tomato	nucleus	20.0	36.84
CDY18621	Canola	nucleus, plastid	35.24	36.63
GSMUA_Achr2P17160_001	Banana	mitochondrion	34.92	36.54
Solyc11g072470.1.1	Tomato	plastid	21.59	35.98
Solyc06g050430.2.1	Tomato	nucleus	23.17	33.64
Solyc06g005090.2.1	Tomato	plastid	20.63	32.83
Bra037142.1-P	Field mustard	nucleus, plastid	39.05	31.22
Solyc06g082430.1.1	Tomato	cytosol, nucleus, plastid	22.86	31.03
Solyc06g007390.2.1	Tomato	nucleus	22.86	30.25
Solyc05g048740.2.1	Tomato	nucleus, plastid	20.63	30.23
Os03t0612400-00	Rice	cytosol, nucleus	35.56	28.21
Solyc06g075330.1.1	Tomato	golgi, nucleus, plastid	17.14	22.31

Protein Annotations

EnsemblPlants:Solyc02g090410.2.1	EnsemblPlantsGene:Solyc02g090410.2	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31301
PANTHER:PTHR31301:SF22	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI0002769242	UniProt:K4BCJ0
MapMan:15.5.24	:	:	:	:	:

Description

No Description!

Coordinates

chr2:-:51970293..51972191

Molecular Weight (calculated)

35133.5 Da

IEP (calculated)

7.017

GRAVY (calculated)

-0.729

Length

315 amino acids

Sequence
(BLAST)

001: MKKRMSSTNS PCAACKFLRR KCTQECVFAP YFPPDQPLKF SNVHKVFGAS NVSKLLNELN AAQREDAVNS LAYEAEYRLR DPVYGCVGLI SLLQQKLRQV
101: QDDLLNARKE LSTYIGPAGM LPIANLQPPG FFQPQQQPMN APSSSTMSPF NMNPMSGMST GVPHGGPLLI RDPQQQQQQQ LLQQPIQVQQ FITAIAAKEQ
201: RDQQEMLKYY EQQEQQEDAV RFNSGFDSTG SVTATGFHQM SSSIPPSLVL AGTYENPYNL VPPHQQSQPE QSLSYQQQVH LQSQQQLQPP QPPETPRQQP
301: RANSEEEGRG SGPSG

Best Arabidopsis Sequence Match ( AT5G66870.1 )
(BLAST)

001: MASSSSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFAFVH KVFGASNVAK LLNELASNQR EDAVNSLFYE AEARLRDPVY GCVGLISILQ HRLKQVNHDL
101: ENAKKELATY VGPQAMLPIL QPHFMSLPPQ PQRPSSSSAS VLTQHHHNLL PMMAIPTGQL YHQQQQQIFE AQQLAAVARE QQNEMFRAYG GGGGSSSPHH
201: QNQAQAEILR FNNGFDSVPA GSVTVTGFNQ LSSGGTAVTG MSLGGNFVDS PSTNNNYHTD QQLHHHHQPQ QHHEAQLFIP SQSSQPLPLQ TQETQTQTQP
301: NSESEEGRRN VIG

Arabidopsis Description

LBD36LOB domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.