CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99521
KRG99949
KRH49100
KRH66092

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66870.1	KRG99521	AT2G37630.1	16243907
AT5G66870.1	KRG99949	AT2G37630.1	16243907
AT5G66870.1	KRH49100	AT2G37630.1	16243907
AT5G66870.1	KRH66092	AT2G37630.1	16243907

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76093	Soybean	cytosol, endoplasmic reticulum, nucleus	21.38	54.63
KRH62409	Soybean	nucleus	39.49	51.42
KRH14912	Soybean	nucleus	28.26	50.98
VIT_00s1247g00010.t01	Wine grape	nucleus	43.84	50.21
KRH73255	Soybean	mitochondrion, nucleus, plastid	27.9	50.0
KRG93235	Soybean	plastid	30.07	49.4
KRH53127	Soybean	nucleus	36.23	49.02
KRH56556	Soybean	nucleus, plastid	30.07	48.82
KRH76950	Soybean	nucleus	53.62	48.68
VIT_07s0197g00030.t01	Wine grape	nucleus	42.75	48.16
KRG97685	Soybean	mitochondrion, nucleus	28.62	47.88
KRH28509	Soybean	nucleus	52.54	47.08
KRH50484	Soybean	cytosol, nucleus, plastid	26.81	46.54
KRG89441	Soybean	cytosol, nucleus, plastid	27.17	45.73
VIT_07s0197g00020.t01	Wine grape	nucleus	48.19	45.55
KRG98217	Soybean	mitochondrion	28.26	45.35
KRH63606	Soybean	plastid	29.71	45.05
KRH54338	Soybean	plastid	29.71	44.32
PGSC0003DMT400002013	Potato	nucleus	46.01	44.25
KRH30173	Soybean	mitochondrion, nucleus	27.54	44.19
KRH11753	Soybean	cytosol, mitochondrion, nucleus, plastid	27.17	44.12
KRH36753	Soybean	cytosol, mitochondrion, nucleus, plastid	27.17	44.12
PGSC0003DMT400002011	Potato	nucleus	45.29	43.4
KRH07170	Soybean	plastid	28.26	43.33
Solyc02g065150.1.1	Tomato	nucleus	45.65	43.3
KRG94119	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	28.26	42.86
KRH03242	Soybean	nucleus, plastid	29.35	42.86
KRH57118	Soybean	plastid	30.07	42.13
KRH20638	Soybean	nucleus	32.61	42.06
KRH13283	Soybean	nucleus	32.25	41.98
VIT_16s0022g02050.t01	Wine grape	cytosol, mitochondrion, nucleus	43.48	41.81
KRH43747	Soybean	mitochondrion	26.81	41.81
VIT_07s0197g00040.t01	Wine grape	cytosol, nucleus, plastid	44.93	41.47
KRH13706	Soybean	mitochondrion	26.45	41.01
KRG88909	Soybean	nucleus	31.16	40.19
PGSC0003DMT400025959	Potato	nucleus	44.2	38.98
Solyc02g090410.2.1	Tomato	mitochondrion, plastid	44.2	38.73
AT5G66870.1	Thale cress	nucleus	43.12	38.02
GSMUA_Achr6P04670_001	Banana	mitochondrion	39.49	37.85
TraesCS4B01G079900.1	Wheat	mitochondrion, nucleus, plastid	38.04	36.97
TraesCS4D01G078800.1	Wheat	mitochondrion, nucleus, plastid	38.04	36.97
CDY49845	Canola	nucleus, plastid	41.67	36.86
CDY52150	Canola	nucleus, plastid	41.67	36.39
Zm00001d033335_P001	Maize	plastid	36.96	36.3
TraesCS4A01G235100.1	Wheat	nucleus	37.68	36.11
KRH10407	Soybean	mitochondrion	22.46	36.05
Bra012112.1-P	Field mustard	nucleus, plastid	43.84	35.8
CDY01457	Canola	nucleus, plastid	43.84	35.8
CDY12784	Canola	nucleus, plastid	43.48	35.71
EER93817	Sorghum	plastid	38.04	35.35
Bra032153.1-P	Field mustard	mitochondrion, nucleus	38.77	34.74
CDX68120	Canola	mitochondrion, nucleus	38.77	34.74
CDX89590	Canola	mitochondrion, nucleus	38.77	34.74
KRH64170	Soybean	nucleus	27.9	34.68
AT2G23660.2	Thale cress	mitochondrion, nucleus	38.77	34.41
KRH53776	Soybean	nucleus	27.54	34.23
GSMUA_Achr2P17160_001	Banana	mitochondrion	37.32	34.22
Zm00001d013732_P001	Maize	plastid	36.96	34.11
HORVU4Hr1G013630.2	Barley	nucleus	36.59	33.55
CDX81360	Canola	plastid	40.22	33.13
KRG89044	Soybean	nucleus, plastid	24.28	32.84
KRH24932	Soybean	nucleus, plastid	23.55	32.18
KRH22937	Soybean	plastid	22.83	31.82
CDY18621	Canola	nucleus, plastid	34.06	31.02
KRH17149	Soybean	cytosol, mitochondrion, nucleus	25.0	27.71
Bra037142.1-P	Field mustard	nucleus, plastid	39.13	27.41
KRG91848	Soybean	plastid	21.74	27.03
KRH34918	Soybean	plastid	21.74	27.03
KRH72805	Soybean	cytosol, mitochondrion, nucleus	24.64	26.88
Os03t0612400-00	Rice	cytosol, nucleus	35.87	24.94

Protein Annotations

EMBL:ACUP02002889	EnsemblPlants:KRH57745	EnsemblPlantsGene:GLYMA_05G081400	EntrezGene:100796406	InterPro:IPR004883	InterPro:LOB
ncoils:Coil	PANTHER:PTHR31301	PANTHER:PTHR31301:SF63	PFAM:PF03195	PFscan:PS50891	ProteinID:KRH57745
ProteinID:KRH57745.1	SEG:seg	UniParc:UPI000233AA0E	UniProt:K7KNS1	MapMan:15.5.24	:

Description

hypothetical protein

Coordinates

chr5:+:12111503..12112333

Molecular Weight (calculated)

30943.5 Da

IEP (calculated)

6.363

GRAVY (calculated)

-0.545

Length

276 amino acids

Sequence
(BLAST)

001: MSSSSNSPCA GCKLLRRKCT QECVFAPYFP PDNPQRFACV HRVFGASNVS KLLSELSVAQ RDDAVKSLAY EAEACLRDPV YGCVGFISLL QQHLRQIQTE
101: LHNAKKELAR YPSPQAMQVL LANPGMLQHG GIVVPHLHQP VFNALSNQMV GQNVGQQEFL ETQQMFLANR DHQHQQQQQQ QHVMLRSYEQ QEFMKFNNGV
201: FEPSVGGGFG NQAEEFLSPS LALGNFENVE SYQMQQQGEQ HHPIEAQLLL SPQQESQGQH QQQQCASEDG RNVVPA

Best Arabidopsis Sequence Match ( AT2G23660.1 )
(BLAST)

001: MASTPCAACK LLRRKCTQEC VFAPYFPPTN PQKFIFVHRV FGASNVTKIL NDLPPDQRED TVNSLFYEAE ARIRDPIYGC VGLISFLQQY LKKIQQDLLT
101: AKEELVGYLG PDAVIPPPYL PPIGNNPPPN FMMSMEGMPP GVIPQGEPLM IREPNMSQQH HHQQPQDEQL QFIASDAQRM AAMMLERGDQ QGMFNGYGID
201: NNGSVTATGF NQMDVNDQGA GGSLSGPSLA LGSFGDAYQM GQETEHGHIN HDQLQTQLML QPPLQEGQEQ TEEGQFLMQP MGQENLHDEE EEEELEPPVK
301: WRMSENKEAS F

Arabidopsis Description

LBD10LOB domain-containing protein 10 [Source:UniProtKB/Swiss-Prot;Acc:O64836]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.