CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98217	Soybean	mitochondrion	95.93	95.93
CDY51008	Canola	mitochondrion	66.28	82.01
CDY72536	Canola	mitochondrion	65.7	81.88
GSMUA_Achr9P18030_001	Banana	mitochondrion, nucleus, plastid	76.74	81.48
GSMUA_Achr3P10050_001	Banana	cytosol, nucleus, plastid	71.51	78.85
KRH14912	Soybean	nucleus	69.19	77.78
KRH73255	Soybean	mitochondrion, nucleus, plastid	69.19	77.27
GSMUA_Achr6P15660_001	Banana	mitochondrion, nucleus, plastid	72.09	76.54
PGSC0003DMT400078256	Potato	mitochondrion, nucleus, plastid	76.16	75.72
Solyc06g082310.2.1	Tomato	mitochondrion, nucleus, plastid	76.16	75.29
GSMUA_Achr10P...	Banana	mitochondrion	67.44	73.42
GSMUA_Achr10P...	Banana	mitochondrion	66.86	72.78
KRG97685	Soybean	mitochondrion, nucleus	69.19	72.12
Solyc06g050950.2.1	Tomato	mitochondrion, nucleus, plastid	69.19	69.59
PGSC0003DMT400061511	Potato	mitochondrion	68.6	69.01
Bra018335.1-P	Field mustard	mitochondrion	74.42	67.72
CDY10714	Canola	mitochondrion	74.42	67.72
Bra022780.1-P	Field mustard	mitochondrion, nucleus	73.26	67.02
CDY24027	Canola	mitochondrion	72.67	66.49
AT2G30130.1	Thale cress	mitochondrion, nucleus	74.42	66.32
Bra021612.1-P	Field mustard	nucleus	72.09	65.26
TraesCS1A01G222300.1	Wheat	mitochondrion	66.28	60.32
TraesCS1B01G235700.1	Wheat	mitochondrion	66.28	60.32
TraesCS1D01G224000.1	Wheat	mitochondrion	66.28	60.32
Zm00001d038013_P001	Maize	mitochondrion	65.7	57.95
Os05t0346800-00	Rice	cytosol, nucleus	67.44	56.04
KRH50484	Soybean	cytosol, nucleus, plastid	51.16	55.35
KRG89441	Soybean	cytosol, nucleus, plastid	52.33	54.88
KRH11753	Soybean	cytosol, mitochondrion, nucleus, plastid	51.74	52.35
KRH36753	Soybean	cytosol, mitochondrion, nucleus, plastid	51.74	52.35
EES19343	Sorghum	mitochondrion	65.7	52.07
KRH43747	Soybean	mitochondrion	52.91	51.41
KRH13706	Soybean	mitochondrion	52.33	50.56
KRH76093	Soybean	cytosol, endoplasmic reticulum, nucleus	31.4	50.0
HORVU1Hr1G060290.2	Barley	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	66.28	48.93
KRH10407	Soybean	mitochondrion	44.19	44.19
KRH56556	Soybean	nucleus, plastid	41.86	42.35
KRG93235	Soybean	plastid	41.28	42.26
KRH63606	Soybean	plastid	42.44	40.11
KRH24932	Soybean	nucleus, plastid	46.51	39.6
KRH54338	Soybean	plastid	42.44	39.46
KRG89044	Soybean	nucleus, plastid	46.51	39.22
KRH07170	Soybean	plastid	40.7	38.89
KRH03242	Soybean	nucleus, plastid	42.44	38.62
KRH22937	Soybean	plastid	44.19	38.38
KRG94119	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	40.12	37.91
KRH57118	Soybean	plastid	42.44	37.06
KRG91848	Soybean	plastid	47.67	36.94
KRH34918	Soybean	plastid	47.09	36.49
KRH53776	Soybean	nucleus	46.51	36.04
KRH64170	Soybean	nucleus	45.93	35.59
KRH13283	Soybean	nucleus	41.86	33.96
KRH20638	Soybean	nucleus	41.86	33.64
KRH62409	Soybean	nucleus	40.7	33.02
KRG88909	Soybean	nucleus	40.7	32.71
KRH17149	Soybean	cytosol, mitochondrion, nucleus	45.35	31.33
KRH72805	Soybean	cytosol, mitochondrion, nucleus	45.93	31.23
KRH53127	Soybean	nucleus	35.47	29.9
KRH57745	Soybean	nucleus	44.19	27.54
KRH28509	Soybean	nucleus	43.02	24.03
KRH76950	Soybean	nucleus	42.44	24.01

Protein Annotations

EMBL:ACUP02006882	EnsemblPlants:KRH30173	EnsemblPlantsGene:GLYMA_11G164800	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF57	PFAM:PF03195	PFscan:PS50891	ProteinID:KRH30173	ProteinID:KRH30173.1
SEG:seg	UniParc:UPI000233C519	UniProt:I1LLS0	MapMan:15.5.24	:	:

Description

hypothetical protein

Coordinates

chr11:-:15688962..15690539

Molecular Weight (calculated)

19341.1 Da

IEP (calculated)

7.302

GRAVY (calculated)

-0.287

Length

172 amino acids

Sequence
(BLAST)

001: MGGTSPCASC KLLRRRCSKD CIFAPYFPSD DPRKFSIVHK VFGASNISKM LQELPIHQRA DAVSSLVYEA NARVRDPVYG CVGAISYLQN QVSQLQMQLA
101: VAQTEILCIQ MQQQEPTLAT QLVDQDDKSM LLSVNNNYEM LPQFLKFPSS SSSSSNVFQD PHEPLKRESF WT

Best Arabidopsis Sequence Match ( AT2G30130.1 )
(BLAST)

001: MGGPGSSPCA SCKLLRRRCA KDCIFAPYFP PDDPHKFAIV HKVFGASNVS KMLQELPVHQ RADAVNSLVF EANARVRDPV YGCVGAISYL QNQVSQLQMQ
101: LAVAQAEILC IQMQNEPTLQ SHHQVLELDQ DHKALLLNNN NINNCNTNNN NNNFGYAMSS GQFNSNFASP SSIMQMQMQM QMQDPLKQES LWT

Arabidopsis Description

LBD12PCK1 [Source:UniProtKB/TrEMBL;Acc:A0A178VRK1]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.