CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039072.1-P	Field mustard	plastid	69.44	57.25
CDY20041	Canola	plastid	69.44	57.25
Bra025294.1-P	Field mustard	plastid	68.52	56.06
CDX83724	Canola	plastid	68.52	56.06
CDY13730	Canola	plastid	68.52	56.06
Bra033019.1-P	Field mustard	plastid	67.59	55.3
CDY03987	Canola	plastid	67.59	55.3
CDY49773	Canola	plastid	67.59	55.3
KRG93235	Soybean	plastid	76.85	49.4
KRH56556	Soybean	nucleus, plastid	76.85	48.82
KRG94119	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	78.7	46.7
KRH07170	Soybean	plastid	77.78	46.67
AT3G27650.1	Thale cress	cytosol, nucleus, plastid	65.74	44.65
KRH63606	Soybean	plastid	69.44	41.21
KRH54338	Soybean	plastid	69.44	40.54
KRH03242	Soybean	nucleus, plastid	70.37	40.21
KRH57118	Soybean	plastid	70.37	38.58
KRH73255	Soybean	mitochondrion, nucleus, plastid	53.7	37.66
KRH14912	Soybean	nucleus	52.78	37.25
KRG97685	Soybean	mitochondrion, nucleus	53.7	35.15
KRH50484	Soybean	cytosol, nucleus, plastid	50.93	34.59
KRG89441	Soybean	cytosol, nucleus, plastid	50.93	33.54
KRH36753	Soybean	cytosol, mitochondrion, nucleus, plastid	51.85	32.94
KRH11753	Soybean	cytosol, mitochondrion, nucleus, plastid	50.93	32.35
KRH43747	Soybean	mitochondrion	51.85	31.64
KRH13706	Soybean	mitochondrion	51.85	31.46
KRH30173	Soybean	mitochondrion, nucleus	50.0	31.4
KRH13283	Soybean	nucleus	61.11	31.13
KRH20638	Soybean	nucleus	61.11	30.84
KRG98217	Soybean	mitochondrion	49.07	30.81
KRG88909	Soybean	nucleus	59.26	29.91
KRH62409	Soybean	nucleus	56.48	28.77
Os01t0169400-01	Rice	plastid	65.74	28.29
KRH10407	Soybean	mitochondrion	44.44	27.91
KRH53127	Soybean	nucleus	50.93	26.96
TraesCS3A01G093200.1	Wheat	plastid	63.89	26.85
TraesCS3B01G108500.1	Wheat	plastid	63.89	26.85
TraesCS3D01G093500.1	Wheat	plastid	63.89	26.85
Zm00001d039694_P001	Maize	plastid	63.89	26.44
KRG89044	Soybean	nucleus, plastid	49.07	25.98
EES00235	Sorghum	plastid	63.89	25.75
KRH53776	Soybean	nucleus	52.78	25.68
KRH64170	Soybean	nucleus	52.78	25.68
KRH24932	Soybean	nucleus, plastid	47.22	25.25
HORVU3Hr1G016690.1	Barley	plastid	63.89	24.91
KRH22937	Soybean	plastid	45.37	24.75
KRH72805	Soybean	cytosol, mitochondrion, nucleus	53.7	22.92
KRH17149	Soybean	cytosol, mitochondrion, nucleus	51.85	22.49
KRH34918	Soybean	plastid	45.37	22.07
KRG91848	Soybean	plastid	44.44	21.62
KRH57745	Soybean	nucleus	54.63	21.38
KRH76950	Soybean	nucleus	59.26	21.05
KRH28509	Soybean	nucleus	59.26	20.78

Protein Annotations

EMBL:ACUP02000564	EnsemblPlants:KRH76093	EnsemblPlantsGene:GLYMA_01G131000	EntrezGene:100782694	InterPro:IPR004883	InterPro:LOB
PANTHER:PTHR31301	PANTHER:PTHR31301:SF12	PFAM:PF03195	PFscan:PS50891	ProteinID:KRH76093	ProteinID:KRH76093.1
UniParc:UPI0002336F9E	UniProt:I1J7M5	MapMan:15.5.24	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:44685701..44686027

Molecular Weight (calculated)

12356.9 Da

IEP (calculated)

7.302

GRAVY (calculated)

-0.247

Length

108 amino acids

Sequence
(BLAST)

001: MASSSYSNSP CDACKFLRKC MMDCIFSPYF PPKEPQKFAN MHKIFGACNV SKLQNEVQPY QREDAVNSLA YEAEAWIEDP VYGCVGAISV LLKVQILHQH
101: RERTFVQM

Best Arabidopsis Sequence Match ( AT3G27650.1 )
(BLAST)

001: MPKRETKKIK PSQEVIKEGP FLVAIHLKGI YMSNYTNSPC AACKFLRRKC TSDCVFAPYF PPEEPTKFAN VHRIFGASNV SKILHEVAPH QREDAVNSLA
101: YEAEARLKDP VYGCVGAISV LQRQVLRLQR ELEETNADLM RYAGCLGGET TSAYGGRRG

Arabidopsis Description

LBD25LOB domain-containing protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8Q3]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.