Factsheet for Bra039072.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20041	Canola	plastid	98.47	98.47
Bra025294.1-P	Field mustard	plastid	92.37	91.67
Bra033019.1-P	Field mustard	plastid	89.31	88.64
AT3G27650.1	Thale cress	cytosol, nucleus, plastid	93.89	77.36
KRH76093	Soybean	cytosol, endoplasmic reticulum, nucleus	57.25	69.44
Solyc02g086480.1.1	Tomato	plastid	67.94	59.73
KRG93235	Soybean	plastid	76.34	59.52
KRH56556	Soybean	nucleus, plastid	76.34	58.82
PGSC0003DMT400032875	Potato	plastid	69.47	57.96
Solyc02g067800.2.1	Tomato	plastid	72.52	56.55
PGSC0003DMT400017805	Potato	plastid	70.99	55.36
VIT_14s0066g00680.t01	Wine grape	nucleus, plastid	71.76	55.29
KRH07170	Soybean	plastid	74.81	54.44
KRG94119	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	74.81	53.85
Bra038606.1-P	Field mustard	plastid	69.47	50.28
Bra035860.1-P	Field mustard	plastid	66.41	49.43
Bra026042.1-P	Field mustard	mitochondrion	51.91	41.72
Bra026716.1-P	Field mustard	mitochondrion	50.38	40.24
Bra014907.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	52.67	40.12
Bra039733.1-P	Field mustard	nucleus, plastid	61.83	40.1
Os01t0169400-01	Rice	plastid	67.94	35.46
Bra018335.1-P	Field mustard	mitochondrion	50.38	34.92
Bra022780.1-P	Field mustard	mitochondrion, nucleus	49.62	34.57
TraesCS3A01G093200.1	Wheat	plastid	67.18	34.24
TraesCS3B01G108500.1	Wheat	plastid	67.18	34.24
TraesCS3D01G093500.1	Wheat	plastid	67.18	34.24
Bra021612.1-P	Field mustard	nucleus	49.62	34.21
Zm00001d039694_P001	Maize	plastid	66.41	33.33
Bra000188.1-P	Field mustard	plastid	50.38	33.17
EES00235	Sorghum	plastid	66.41	32.46
HORVU3Hr1G016690.1	Barley	plastid	67.18	31.77
Bra031599.1-P	Field mustard	nucleus, plastid	49.62	31.4
Bra004572.1-P	Field mustard	cytosol, mitochondrion, nucleus	53.44	31.39
Bra016992.1-P	Field mustard	plastid	48.09	31.34
Bra018675.1-P	Field mustard	plastid	48.85	31.07
Bra035698.1-P	Field mustard	plastid	48.85	27.95
Bra011942.1-P	Field mustard	plastid	49.62	27.9
Bra018320.1-P	Field mustard	mitochondrion	49.62	27.54
Bra000491.1-P	Field mustard	plastid	48.09	27.27
Bra012112.1-P	Field mustard	nucleus, plastid	58.78	22.78
Bra032153.1-P	Field mustard	mitochondrion, nucleus	52.67	22.4
Bra037142.1-P	Field mustard	nucleus, plastid	49.62	16.5

Protein Annotations

EnsemblPlants:Bra039072.1	EnsemblPlants:Bra039072.1-P	EnsemblPlantsGene:Bra039072	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF12	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI0002541B99
UniProt:M4FDA2	MapMan:15.5.24	:	:	:	:

Description

AT3G27650 (E=5e-058) LBD25 | LBD25 (LOB DOMAIN-CONTAINING PROTEIN 25)

Coordinates

chrA09:+:1261020..1261415

Molecular Weight (calculated)

14583.3 Da

IEP (calculated)

7.789

GRAVY (calculated)

-0.344

Length

131 amino acids

Sequence
(BLAST)

001: MSSSYSNYTN SPCAACKFLR RKCTSDCVFA PYFPPEEPLK FANVHRIFGA SNVSKILHEV APHQREDAVN SLAYEAEARL KDPVYGCVGA ISVLQREVLR
101: LQRELEETNV DLMRYASCLG GETSAYGGRR G

Best Arabidopsis Sequence Match ( AT3G27650.1 )
(BLAST)

001: MPKRETKKIK PSQEVIKEGP FLVAIHLKGI YMSNYTNSPC AACKFLRRKC TSDCVFAPYF PPEEPTKFAN VHRIFGASNV SKILHEVAPH QREDAVNSLA
101: YEAEARLKDP VYGCVGAISV LQRQVLRLQR ELEETNADLM RYAGCLGGET TSAYGGRRG

Arabidopsis Description

LBD25LOB domain-containing protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8Q3]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.