CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039694_P001	Maize	plastid	89.93	92.34
Os01t0169400-01	Rice	plastid	77.61	82.87
TraesCS3D01G093500.1	Wheat	plastid	73.51	76.65
TraesCS3B01G108500.1	Wheat	plastid	73.13	76.26
TraesCS3A01G093200.1	Wheat	plastid	73.13	76.26
HORVU3Hr1G016690.1	Barley	plastid	73.51	71.12
Bra039072.1-P	Field mustard	plastid	32.46	66.41
CDY20041	Canola	plastid	32.09	65.65
CDY13730	Canola	plastid	32.09	65.15
Bra025294.1-P	Field mustard	plastid	32.09	65.15
CDX83724	Canola	plastid	31.72	64.39
CDY49773	Canola	plastid	31.72	64.39
KRH76093	Soybean	cytosol, endoplasmic reticulum, nucleus	25.75	63.89
PGSC0003DMT400017805	Potato	plastid	39.93	63.69
Solyc02g067800.2.1	Tomato	plastid	39.93	63.69
CDY03987	Canola	plastid	31.34	63.64
Bra033019.1-P	Field mustard	plastid	31.34	63.64
Solyc02g086480.1.1	Tomato	plastid	35.07	63.09
PGSC0003DMT400032875	Potato	plastid	36.94	63.06
KRH56556	Soybean	nucleus, plastid	39.93	62.94
KRG93235	Soybean	plastid	39.18	62.5
VIT_14s0066g00680.t01	Wine grape	nucleus, plastid	38.81	61.18
KRH54338	Soybean	plastid	42.16	61.08
VIT_17s0000g09010.t01	Wine grape	plastid	41.42	60.33
KRH03242	Soybean	nucleus, plastid	42.54	60.32
KRH63606	Soybean	plastid	40.67	59.89
CDY16738	Canola	plastid	39.18	59.66
KRH07170	Soybean	plastid	39.93	59.44
CDY48125	Canola	plastid	38.81	59.09
PGSC0003DMT400046644	Potato	nucleus, plastid	41.79	58.64
PGSC0003DMT400069646	Potato	plastid	38.06	58.29
KRG94119	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	39.55	58.24
Bra038606.1-P	Field mustard	plastid	39.18	58.01
CDY68853	Canola	plastid	39.18	58.01
CDY69697	Canola	plastid	39.18	58.01
Bra035860.1-P	Field mustard	plastid	38.06	57.95
KRH57118	Soybean	plastid	42.54	57.87
Solyc03g112430.1.1	Tomato	nucleus, plastid	41.04	56.12
AT3G27650.1	Thale cress	cytosol, nucleus, plastid	32.46	54.72
AT5G63090.3	Thale cress	plastid	37.69	54.3
Solyc06g071660.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	36.94	48.77
EES07852	Sorghum	plastid	31.72	39.91
EER93717	Sorghum	plastid	30.6	39.61
KXG22772	Sorghum	plastid	30.6	39.42
EES18939	Sorghum	plastid	28.36	34.7
EES19343	Sorghum	mitochondrion	26.49	32.72
OQU78015	Sorghum	plastid	35.82	31.17
EER92422	Sorghum	plastid	25.75	29.36
OQU87769	Sorghum	cytosol	27.24	29.32
EER93817	Sorghum	plastid	29.85	26.94
OQU88012	Sorghum	mitochondrion, vacuole	33.21	26.81
OQU77508	Sorghum	cytosol, nucleus, plastid	27.24	23.78

Protein Annotations

EnsemblPlants:EES00235	EnsemblPlantsGene:SORBI_3003G052900	EntrezGene:8078489	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF35	PFAM:PF03195	PFscan:PS50891	ProteinID:EES00235	ProteinID:EES00235.1
RefSeq:XP_002455115.1	SEG:seg	UniParc:UPI0001A845A9	UniProt:C5XNG8	MapMan:15.5.24	:

Description

hypothetical protein

Coordinates

chr3:+:4788870..4791162

Molecular Weight (calculated)

27317.4 Da

IEP (calculated)

7.798

GRAVY (calculated)

0.023

Length

268 amino acids

Sequence
(BLAST)

001: MASPSSTSNN SALSPVAASG ATTPGAGAPC AACKFLRRKC LPGCVFAPYF PPEEPQKFAN VHKVFGASNV TKLLNELLPH QREDAVSSLA YEAEARVKDP
101: VYGCVGAISV LQRQVHRLQK ELDAAHAELL RYACGDVAAG IPTALPVSVS VSAAPRLSTA MTTSPGQFAA AAATAHATAG MYGSSRRLGV LDGVVAAPPP
201: PPPAGGCYFM RNHSNVISSP PGADVAPVLP YASMANWAVN AISASTTTTS GSESIGGLDH KEGGDSSM

Best Arabidopsis Sequence Match ( AT5G63090.1 )
(BLAST)

001: MASSSNSYNS PCAACKFLRR KCMPGCIFAP YFPPEEPHKF ANVHKIFGAS NVTKLLNELL PHQREDAVNS LAYEAEARVR DPVYGCVGAI SYLQRQVHRL
101: QKELDAANAD LAHYGLSTSA AGAPGNVVDL VFQPQPLPSQ QLPPLNPVYR LSGASPVMNQ MPRGTGGSYG TFLPWNNGHD QQGGNM

Arabidopsis Description

LOBLOB [Source:UniProtKB/TrEMBL;Acc:A0A178UKE6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.