CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2
plastid 4
nucleus 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plasma membrane
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92557	nucleus
EES17234	nucleus
KXG38649	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65620.1	EES17234	AT2G37630.1	22822207
AT1G65620.1	EES17234	AT2G37630.1	22822207
AT1G65620.1	EER92557	AT4G00220.1	22822207
AT1G65620.1	KXG38649	AT4G00220.1	22822207
AT1G65620.1	EER92557	AT4G00220.1	22822207
AT1G65620.1	KXG38649	AT4G00220.1	22822207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G270400.1	Wheat	plastid	62.34	73.0
TraesCS1A01G260000.1	Wheat	plastid	62.34	72.73
TraesCS1D01G259900.1	Wheat	plastid	61.69	72.24
Os05t0417000-00	Rice	plastid	62.99	69.53
HORVU1Hr1G064640.3	Barley	plastid	61.69	68.35
Solyc03g063140.2.1	Tomato	nucleus, plastid	31.49	55.75
OQU88012	Sorghum	mitochondrion, vacuole	56.82	52.71
PGSC0003DMT400002549	Potato	plastid	30.84	50.26
AT1G65620.1	Thale cress	plastid	32.14	49.75
Bra039733.1-P	Field mustard	nucleus, plastid	32.47	49.51
CDY16414	Canola	nucleus, plastid	32.47	49.51
CDY46781	Canola	nucleus, plastid	32.47	49.51
VIT_00s0340g00090.t01	Wine grape	nucleus	32.79	46.76
KRH20638	Soybean	nucleus	31.82	45.79
KRH13283	Soybean	nucleus	31.49	45.75
Solyc11g008830.1.1	Tomato	plastid	33.44	44.78
KRG88909	Soybean	nucleus	27.92	40.19
EES00235	Sorghum	plastid	31.17	35.82
KXG22772	Sorghum	plastid	23.38	34.62
EES07852	Sorghum	plastid	23.38	33.8
EER93717	Sorghum	plastid	21.75	32.37
EES19343	Sorghum	mitochondrion	22.73	32.26
EER93817	Sorghum	plastid	29.22	30.3
EES18939	Sorghum	plastid	21.1	29.68
OQU87769	Sorghum	cytosol	22.4	27.71
EER92422	Sorghum	plastid	21.1	27.66
OQU77508	Sorghum	cytosol, nucleus, plastid	21.75	21.82

Protein Annotations

EnsemblPlants:OQU78015	EnsemblPlantsGene:SORBI_3009G138500	EntrezGene:8076962	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF26	PFAM:PF03195	PFscan:PS50891	ProteinID:OQU78015	ProteinID:OQU78015.1
RefSeq:XP_002441102.1	SEG:seg	UniParc:UPI0001A893AA	UniProt:A0A1Z5R3K0	MapMan:15.5.24	:

Description

hypothetical protein

Coordinates

chr9:-:49549424..49552695

Molecular Weight (calculated)

30612.9 Da

IEP (calculated)

7.147

GRAVY (calculated)

0.023

Length

308 amino acids

Sequence
(BLAST)

001: MAASSASSVP VVSTGSVITV AASPPPPPPT GGGGGGGGSI SAGSTGVVVG GGAGTGSPCA ACKFLRRKCQ PDCVFAPYFP PDNPQKFVHV HRVFGASNVT
101: KILNELHPYQ REDAVNSLAY EADMRLRDPV YGCVGVISIL QHRLRLVQQE LARATYELSK YQAAAAAAEA ASVGVGSHGD AAAGMAAVDF IGNAVANDCT
201: QNFINVGHST AAAASISGAG GGFMQQQDSF GASVQMLARS YEGGAAARVG MNGGGGSGYG GFAYSSAMGV VGHGGIVSAG LGGQQINGGQ QFLKPSTTAG
301: DDQPTATQ

Best Arabidopsis Sequence Match ( AT1G65620.2 )
(BLAST)

001: MASSSTNSPC AACKFLRRKC QPECVFAPYF PPDQPQKFAN VHKVFGASNV TKLLNELHPS QREDAVNSLA YEADMRLRDP VYGCVGVISL LQHQLRQLQI
101: DLSCAKSELS KYQSLGILAA THQSLGINLL AGAADGTATA VRDHYHHHQF FPREQMFGGL DVPAGNNYDG GILAIGQITQ FQQPRAAAGD DGRRTVDPS

Arabidopsis Description

AS2AS2 [Source:UniProtKB/TrEMBL;Acc:A0A178WIA0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.