CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028721_P001	Maize	plastid	91.91	91.91
Zm00001d047752_P001	Maize	plastid	88.09	86.61
HORVU4Hr1G056890.2	Barley	plastid	71.49	75.0
TraesCS4D01G197400.1	Wheat	plastid	71.06	74.89
TraesCS4B01G197100.1	Wheat	plastid	71.06	74.89
TraesCS4A01G107300.1	Wheat	plastid	69.79	73.54
Os03t0287400-01	Rice	plastid	71.06	69.87
Solyc11g072470.1.1	Tomato	plastid	50.64	62.96
KRH10407	Soybean	mitochondrion	45.53	62.21
KRH24932	Soybean	nucleus, plastid	52.34	60.89
Solyc06g005090.2.1	Tomato	plastid	51.06	60.61
VIT_06s0004g03330.t01	Wine grape	nucleus, plastid	51.91	60.4
KRG89044	Soybean	nucleus, plastid	51.91	59.8
GSMUA_Achr7P15500_001	Banana	nucleus	49.79	59.69
GSMUA_Achr8P09700_001	Banana	cytosol	51.49	59.31
VIT_06s0004g03350.t01	Wine grape	plastid	51.49	59.31
KRH22937	Soybean	plastid	49.79	59.09
VIT_13s0019g03700.t01	Wine grape	plastid	49.36	58.88
GSMUA_Achr4P16790_001	Banana	plastid	47.23	58.42
PGSC0003DMT400065346	Potato	plastid	51.91	58.37
AT1G07900.1	Thale cress	plastid	45.53	56.32
EES18939	Sorghum	plastid	51.06	54.79
KRG91848	Soybean	plastid	50.21	53.15
CDY22713	Canola	plastid	42.55	52.36
KRH34918	Soybean	plastid	49.36	52.25
CDY06285	Canola	nucleus, plastid	41.7	51.58
Bra018675.1-P	Field mustard	plastid	45.11	51.46
GSMUA_Achr10P...	Banana	plastid	53.19	50.0
CDY15755	Canola	plastid	45.96	49.77
CDY04570	Canola	plastid	45.96	49.54
PGSC0003DMT400065297	Potato	plastid	45.11	49.07
CDY31207	Canola	plastid	45.11	49.07
CDY62454	Canola	plastid	44.68	48.39
Bra031599.1-P	Field mustard	nucleus, plastid	42.55	48.31
CDX77182	Canola	plastid	44.26	47.93
GSMUA_Achr3P17800_001	Banana	mitochondrion, plastid	47.66	47.86
Bra000491.1-P	Field mustard	plastid	46.81	47.62
CDX83290	Canola	plastid	46.81	47.62
Bra011942.1-P	Field mustard	plastid	46.81	47.21
Bra035698.1-P	Field mustard	plastid	45.53	46.72
AT2G28500.1	Thale cress	plastid	45.96	46.55
CDX93609	Canola	nucleus	44.26	46.22
CDX95115	Canola	plastid	44.68	46.05
EER93717	Sorghum	plastid	31.06	35.27
EES07852	Sorghum	plastid	31.06	34.27
KXG22772	Sorghum	plastid	29.79	33.65
EES19343	Sorghum	mitochondrion	31.06	33.64
OQU87769	Sorghum	cytosol	28.94	27.31
EES00235	Sorghum	plastid	29.36	25.75
EER93817	Sorghum	plastid	29.36	23.23
OQU78015	Sorghum	plastid	27.66	21.1
OQU77508	Sorghum	cytosol, nucleus, plastid	27.23	20.85
OQU88012	Sorghum	mitochondrion, vacuole	27.66	19.58

Protein Annotations

EnsemblPlants:EER92422	EnsemblPlantsGene:SORBI_3001G409200	EntrezGene:8081443	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF29	PFAM:PF03195	PFscan:PS50891	ProteinID:EER92422	ProteinID:EER92422.1
RefSeq:XP_002465424.1	SEG:seg	SUPFAM:SSF101447	UniParc:UPI0001A82C0C	UniProt:C5WNK8	MapMan:15.5.24

Description

hypothetical protein

Coordinates

chr1:+:69289989..69291418

Molecular Weight (calculated)

25060.6 Da

IEP (calculated)

6.867

GRAVY (calculated)

-0.282

Length

235 amino acids

Sequence
(BLAST)

001: MDYGNASTGS TAAPEQYNYC RSVSPPSRVS SCSPPPPPPP PPPAVLQVVG NVPPTVVLSP CAACKILRRR CADGCVLAPY FPPTEPAKFT TAHRVFGASN
101: IIKLLQDLPE SSRADAVSSM VYEAEARLRD PVYGCAGAVC RLQKQANELK VQLARAQADL LNAQAQHANL LALFCVEMAN RRGGNQQQHP SSPLTTTMDG
201: GGGSSGLFGA AYQQTFYDSD LDSATWPDHE AQLWT

Best Arabidopsis Sequence Match ( AT1G07900.1 )
(BLAST)

001: MESKSDASVA TTPIISSSSS PPPSLSPRVV LSPCAACKIL RRRCAERCVL APYFPPTDPA KFTIAHRVFG ASNIIKFLQE LPESQRTDAV NSMVYEAEAR
101: IRDPVYGCAG AIYHLQRQVS ELQAQLAKAQ VEMVNMQFQR SNLLELIYNM DQQQKQEQDN MSFESNDLGF LEDKSNTNSS MLWWDPLWTC

Arabidopsis Description

LBD1LBD1 [Source:UniProtKB/TrEMBL;Acc:A0A178WM56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.