CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15755	Canola	plastid	95.41	95.85
Bra011942.1-P	Field mustard	plastid	98.17	91.85
CDY62454	Canola	plastid	87.61	88.02
CDX77182	Canola	plastid	87.61	88.02
AT2G28500.1	Thale cress	plastid	85.78	80.6
CDY31207	Canola	plastid	79.36	80.09
CDX83290	Canola	plastid	78.9	74.46
CDY22713	Canola	plastid	61.93	70.68
CDY06285	Canola	nucleus, plastid	60.55	69.47
KRH10407	Soybean	mitochondrion	50.92	64.53
Solyc11g072470.1.1	Tomato	plastid	54.59	62.96
CDX93609	Canola	nucleus	64.68	62.67
Solyc04g050010.1.1	Tomato	cytosol	46.33	61.21
CDX95115	Canola	plastid	63.3	60.53
KRG89044	Soybean	nucleus, plastid	56.42	60.29
KRH22937	Soybean	plastid	54.59	60.1
Solyc06g005090.2.1	Tomato	plastid	54.59	60.1
KRH24932	Soybean	nucleus, plastid	55.05	59.41
VIT_06s0004g03330.t01	Wine grape	nucleus, plastid	54.59	58.91
VIT_13s0019g03700.t01	Wine grape	plastid	53.21	58.88
VIT_06s0004g03350.t01	Wine grape	plastid	54.13	57.84
PGSC0003DMT400010597	Potato	cytosol, nucleus, plastid	45.41	57.23
PGSC0003DMT400019410	Potato	plastid	51.38	56.57
CDY72536	Canola	mitochondrion	35.78	56.52
PGSC0003DMT400065346	Potato	plastid	54.13	56.46
CDY51008	Canola	mitochondrion	35.78	56.12
Solyc05g048740.2.1	Tomato	nucleus, plastid	55.05	55.81
KRH34918	Soybean	plastid	55.96	54.95
KRG91848	Soybean	plastid	55.5	54.5
GSMUA_Achr6P33070_001	Banana	plastid	48.62	54.08
PGSC0003DMT400065297	Potato	plastid	50.92	51.39
CDX83724	Canola	plastid	30.28	50.0
CDY13730	Canola	plastid	30.28	50.0
CDY20041	Canola	plastid	29.82	49.62
CDY03987	Canola	plastid	29.82	49.24
CDY49773	Canola	plastid	29.36	48.48
TraesCS1A01G062200.1	Wheat	cytosol, plastid	45.41	48.06
GSMUA_Achr9P04330_001	Banana	plastid	38.07	46.63
TraesCS2D01G008400.1	Wheat	plastid	45.41	46.05
HORVU1Hr1G012720.1	Barley	cytosol, plastid	45.41	46.05
TraesCS1B01G080600.1	Wheat	cytosol, plastid	45.41	46.05
EER92422	Sorghum	plastid	49.54	45.96
Zm00001d047752_P001	Maize	plastid	50.0	45.61
TraesCS4B01G197100.1	Wheat	plastid	46.33	45.29
Zm00001d010978_P001	Maize	plastid	44.04	45.28
Zm00001d035498_P001	Maize	plastid	45.87	45.25
HORVU4Hr1G056890.2	Barley	plastid	46.33	45.09
TraesCS4D01G197400.1	Wheat	plastid	45.87	44.84
EES18939	Sorghum	plastid	44.95	44.75
TraesCS4A01G107300.1	Wheat	plastid	45.41	44.39
CDX77553	Canola	cytosol, mitochondrion, nucleus, plastid	34.86	44.19
Zm00001d028721_P001	Maize	plastid	47.25	43.83
CDY50718	Canola	cytosol, mitochondrion, nucleus, plastid	34.4	43.6
CDX81767	Canola	cytosol, nucleus, plastid	32.57	43.29
CDY40054	Canola	mitochondrion	32.11	42.94
CDY66794	Canola	mitochondrion	32.11	42.94
Os03t0287400-01	Rice	plastid	46.33	42.26
CDY24027	Canola	mitochondrion	35.78	41.49
CDY10714	Canola	mitochondrion	35.78	41.27
CDY50999	Canola	cytosol, mitochondrion, plastid	30.73	40.85
Solyc06g075330.1.1	Tomato	golgi, nucleus, plastid	44.04	39.67
CDY48125	Canola	plastid	30.73	38.07
CDY16738	Canola	plastid	30.73	38.07
CDY68853	Canola	plastid	30.73	37.02
CDY69697	Canola	plastid	30.28	36.46
CDY67958	Canola	plastid	32.11	35.35
CDY23903	Canola	plastid	32.11	35.35
CDY06988	Canola	plastid	31.65	34.33
CDY16414	Canola	nucleus, plastid	31.65	34.16
CDY46781	Canola	nucleus, plastid	31.65	34.16
CDX93178	Canola	cytosol, nucleus, plastid	32.57	31.28
CDY24903	Canola	mitochondrion	32.57	30.74
CDY07604	Canola	mitochondrion	32.11	30.17
CDY10726	Canola	mitochondrion	30.28	27.97
CDY02059	Canola	mitochondrion	30.28	27.97
CDX68120	Canola	mitochondrion, nucleus	31.65	22.4
CDX89590	Canola	mitochondrion, nucleus	31.65	22.4
CDY49845	Canola	nucleus, plastid	30.28	21.15
CDY52150	Canola	nucleus, plastid	30.28	20.89
CDY12784	Canola	nucleus, plastid	30.73	19.94
CDY01457	Canola	nucleus, plastid	30.73	19.82
CDY18621	Canola	nucleus, plastid	26.15	18.81
CDX81360	Canola	plastid	27.06	17.61

Protein Annotations

EnsemblPlants:CDY04570	EnsemblPlantsGene:GSBRNA2T00118760001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31301
PANTHER:PTHR31301:SF6	PFAM:PF03195	PFscan:PS50891	ProteinID:CDY04570	ProteinID:CDY04570.1	SEG:seg
UniParc:UPI0004EDEB40	MapMan:15.5.24	:	:	:	:

Description

BnaA07g13960D

Coordinates

chrLK031955:-:848054..849556

Molecular Weight (calculated)

24058.7 Da

IEP (calculated)

5.788

GRAVY (calculated)

-0.272

Length

218 amino acids

Sequence
(BLAST)

001: MLKMEINGST STTSPTASTV AVVSASETTT PVSSPSLTSS PPPSLSPPQP PQPQVVLSPC AACKILRRRC AEKCVLAPYF PPTDPAKFTI AHRVFGASNI
101: IKFLQELPES QRTDAVNSMV YEAGARLRDP VYGCAGAIYH LQRQVSQLQA QLAKTQVELV SMQLQRSDLL ELFYKMEQTK LSAQEGQQNM SFEMTNDLVF
201: LEDTNNNNSS MSWWDPLW

Best Arabidopsis Sequence Match ( AT2G28500.1 )
(BLAST)

001: MLKMEINGGV ATPTASAVAK VTETTTPVNS PSPTSSPPPP PSPQQPPQPP VVLSPCAACK ILRRRCADKC VLAPYFPPTD PAKFTIAHRV FGASNIIKFL
101: QELPESQRTD AVNSMVYEAG ARMRDPVYGC AGAIYHLQRQ VSELQAQLAK TQVELVGMQL QRSSLLELIY NMEQTKLSVQ EQGQQKMSFE SSFESGDEFI
201: SSPDEESNDL GFLEDNNNNN NSSMSWWDPL WT

Arabidopsis Description

LBD11LOB domain-containing protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK08]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.