CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018320.1-P	Field mustard	mitochondrion	98.73	98.73
CDY10726	Canola	mitochondrion	98.73	98.73
AT2G30340.2	Thale cress	nucleus	91.95	80.67
CDY23903	Canola	plastid	51.69	61.62
CDY67958	Canola	plastid	51.69	61.62
CDY06988	Canola	plastid	51.69	60.7
HORVU1Hr1G024490.1	Barley	cytosol, mitochondrion, nucleus	40.68	57.83
GSMUA_Achr11P...	Banana	cytosol	51.27	55.76
GSMUA_AchrUn_...	Banana	plastid	43.22	55.43
CDY72536	Canola	mitochondrion	31.78	54.35
CDX93178	Canola	cytosol, nucleus, plastid	51.69	53.74
CDY24903	Canola	mitochondrion	52.54	53.68
GSMUA_Achr7P22200_001	Banana	nucleus	47.88	53.55
CDY07604	Canola	mitochondrion	52.54	53.45
GSMUA_Achr5P07460_001	Banana	nucleus	47.03	53.11
Zm00001d009823_P001	Maize	plastid	48.31	52.05
CDY51008	Canola	mitochondrion	30.51	51.8
CDX83724	Canola	plastid	28.39	50.76
CDY13730	Canola	plastid	28.39	50.76
CDY20041	Canola	plastid	27.54	49.62
TraesCS1B01G131900.2	Wheat	nucleus	48.73	48.52
TraesCS1D01G113100.1	Wheat	nucleus	48.31	48.51
CDY03987	Canola	plastid	27.12	48.48
CDY49773	Canola	plastid	27.12	48.48
TraesCS1A01G111700.1	Wheat	nucleus	47.88	47.68
Os05t0165450-00	Rice	extracellular	48.31	45.97
Zm00001d043036_P001	Maize	cytosol	44.49	44.3
CDX77553	Canola	cytosol, mitochondrion, nucleus, plastid	32.2	44.19
CDY50718	Canola	cytosol, mitochondrion, nucleus, plastid	31.78	43.6
TraesCS3D01G340000.1	Wheat	cytosol	45.76	43.55
Os01t0825000-01	Rice	cytosol	45.76	43.03
TraesCS3A01G346300.1	Wheat	cytosol	45.34	42.8
OQU87769	Sorghum	cytosol	44.07	41.77
CDY24027	Canola	mitochondrion	33.05	41.49
CDY40054	Canola	mitochondrion	28.39	41.1
CDX81767	Canola	cytosol, nucleus, plastid	28.39	40.85
CDY66794	Canola	mitochondrion	27.97	40.49
CDY50999	Canola	cytosol, mitochondrion, plastid	27.97	40.24
CDY10714	Canola	mitochondrion	32.2	40.21
OQU77508	Sorghum	cytosol, nucleus, plastid	50.0	38.44
CDY48125	Canola	plastid	26.69	35.8
CDY16738	Canola	plastid	26.69	35.8
TraesCS3B01G378100.1	Wheat	plastid	44.07	35.62
CDY69697	Canola	plastid	26.69	34.81
CDY68853	Canola	plastid	26.69	34.81
CDY16414	Canola	nucleus, plastid	28.81	33.66
CDY46781	Canola	nucleus, plastid	28.81	33.66
HORVU3Hr1G088440.1	Barley	plastid	46.19	33.03
CDY06285	Canola	nucleus, plastid	25.42	31.58
CDY22713	Canola	plastid	25.42	31.41
CDY04570	Canola	plastid	27.97	30.28
CDY15755	Canola	plastid	27.54	29.95
CDY62454	Canola	plastid	27.12	29.49
CDX77182	Canola	plastid	27.12	29.49
CDY31207	Canola	plastid	26.27	28.7
CDX83290	Canola	plastid	27.54	28.14
CDX95115	Canola	plastid	26.69	27.63
CDX93609	Canola	nucleus	26.27	27.56
CDX89590	Canola	mitochondrion, nucleus	27.12	20.78
CDX68120	Canola	mitochondrion, nucleus	27.12	20.78
CDY49845	Canola	nucleus, plastid	27.12	20.51
CDY52150	Canola	nucleus, plastid	27.12	20.25
CDY12784	Canola	nucleus, plastid	27.97	19.64
CDY01457	Canola	nucleus, plastid	27.97	19.53
CDY18621	Canola	nucleus, plastid	23.31	18.15
CDX81360	Canola	plastid	24.58	17.31

Protein Annotations

EnsemblPlants:CDY02059	EnsemblPlantsGene:GSBRNA2T00113417001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31301
PANTHER:PTHR31301:SF28	PFAM:PF03195	PFscan:PS50891	ProteinID:CDY02059	ProteinID:CDY02059.1	SEG:seg
UniParc:UPI0004EE8CBE	MapMan:15.5.24	:	:	:	:

Description

BnaC04g14420D

Coordinates

chrLK031931:-:981046..983115

Molecular Weight (calculated)

25431.9 Da

IEP (calculated)

8.732

GRAVY (calculated)

-0.423

Length

236 amino acids

Sequence
(BLAST)

001: MGIRRHVAVP PGTTLNTVTP CAACKLLRRR CAEECPFSPY FSPHEPHKFA AVHKVFGASN VSKMLLEVGE SQRGDAANSL VYEANLRLRD PIYGCMGAIS
101: ALQHHIQSLQ SELTTVRTEI LRHKYREAAT ITSLQNNNNN NFNNTTTSVS DHASLAASIL LPPPPPPPPP PRPPRLFSSQ PAPPPTPPAS LPSPSMVVSS
201: SSSNSSATNS IYNHPPSSTA GYSNSLSSDN NVHYFD

Best Arabidopsis Sequence Match ( AT2G30340.1 )
(BLAST)

001: MSREREGFGE YYETVKKIKK DPAFETTTDH AVMGIRRHVA VPPGTTLNTV TPCAACKLLR RRCAEECPFS PYFSPHEPHK FAAVHKVFGA SNVSKMLLEV
101: GESQRGDAAN SLVYEANLRL RDPIYGCMGA ISALQHHIQS LQSELTTVRT EILRHKYQEA TTITSLQNNF NSTTTTSSVS CDQHALASAI LLPPPPPPPP
201: TPRPPRLLSS QPAPPPTPPV SLPSPSMVVS SSSSSNSSAT NSMYNPPPSS TAGYSNSLSS DNNVHYFD

Arabidopsis Description

LBD13LBD13 [Source:UniProtKB/TrEMBL;Acc:A0A178VRU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.