Factsheet for TraesCS1B01G131900.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G111700.1	Wheat	nucleus	97.89	97.89
TraesCS1D01G113100.1	Wheat	nucleus	97.05	97.87
HORVU1Hr1G024490.1	Barley	cytosol, mitochondrion, nucleus	68.35	97.59
Zm00001d009823_P001	Maize	plastid	66.67	72.15
GSMUA_AchrUn_...	Banana	plastid	52.32	67.39
Os05t0165450-00	Rice	extracellular	70.04	66.94
GSMUA_Achr5P07460_001	Banana	nucleus	57.38	65.07
GSMUA_Achr11P...	Banana	cytosol	54.43	59.45
VIT_13s0067g02380.t01	Wine grape	nucleus	56.12	59.38
OQU77508	Sorghum	cytosol, nucleus, plastid	76.37	58.96
GSMUA_Achr7P22200_001	Banana	nucleus	52.32	58.77
KRH53776	Soybean	nucleus	52.74	56.31
KRH64170	Soybean	nucleus	51.9	55.41
Solyc06g050430.2.1	Tomato	nucleus	49.79	54.38
VIT_06s0004g07790.t01	Wine grape	cytosol	52.32	54.15
PGSC0003DMT400078265	Potato	cytosol, nucleus, plastid	48.52	51.8
PGSC0003DMT400052995	Potato	plastid	43.46	51.24
Solyc06g082430.1.1	Tomato	cytosol, nucleus, plastid	48.95	50.0
Solyc06g007390.2.1	Tomato	nucleus	48.95	48.74
Bra018320.1-P	Field mustard	mitochondrion	48.52	48.73
CDY02059	Canola	mitochondrion	48.52	48.73
CDY10726	Canola	mitochondrion	48.52	48.73
KRH17149	Soybean	cytosol, mitochondrion, nucleus	48.95	46.59
KRH72805	Soybean	cytosol, mitochondrion, nucleus	49.37	46.25
AT2G30340.2	Thale cress	nucleus	50.21	44.24
TraesCS3B01G378100.1	Wheat	plastid	51.48	41.78
TraesCS4B01G016200.1	Wheat	plastid	30.8	41.71
TraesCS1B01G235700.1	Wheat	mitochondrion	32.91	41.27
PGSC0003DMT400074783	Potato	mitochondrion	47.26	40.88
TraesCS5B01G150800.1	Wheat	plastid	30.38	40.68
TraesCS1B01G080600.1	Wheat	cytosol, plastid	27.85	30.7
TraesCS4B01G197100.1	Wheat	plastid	26.58	28.25
TraesCS3B01G108500.1	Wheat	plastid	29.54	27.24
TraesCS3B01G435700.1	Wheat	plastid	29.54	27.03
TraesCS1B01G270400.1	Wheat	plastid	29.54	26.62
TraesCS4B01G079900.1	Wheat	mitochondrion, nucleus, plastid	28.27	23.59

Protein Annotations

EnsemblPlants:TraesCS1B01G131900.2	EnsemblPlantsGene:TraesCS1B01G131900	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31301
PANTHER:PTHR31301:SF28	PFAM:PF03195	PFscan:PS50891	SEG:seg	MapMan:15.5.24	:

Description

No Description!

Coordinates

chr1B:-:165076130..165077780

Molecular Weight (calculated)

24792.3 Da

IEP (calculated)

8.490

GRAVY (calculated)

-0.146

Length

237 amino acids

Sequence
(BLAST)

001: MSTASEWQQD HDVGKKIKSE SAAEADRMMA AARRSSSLPA AGAGPGSTPS FNTMTPCAAC KLLRRRCAQE CPFSPFFSPL EPHKFASVHK VFGASNVSKM
101: LLEVHESQRG DAANSLVYEA NLRLRDPVYG CMGAILTLQQ QVHALEAELA AVRAEILKHR YRPAAAAAAS AVPNVPPSSH ASQLLAAGGH RPAGSLGLAA
201: PAVGPVASAS SSTTVYATAS SSTDYSSITH ENVPYFG

Best Arabidopsis Sequence Match ( AT2G30340.2 )
(BLAST)

001: MIGNNREGFG EYYETVKKIK KDPAFETTTD HAVMGIRRHV AVPPGTTLNT VTPCAACKLL RRRCAEECPF SPYFSPHEPH KFAAVHKVFG ASNVSKMLLE
101: VGESQRGDAA NSLVYEANLR LRDPIYGCMG AISALQHHIQ SLQSELTTVR TEILRHKYQE ATTITSLQNN FNSTTTTSSV SCDQHALASA ILLPPPPPPP
201: PTPRPPRLLS SQPAPPPTPP VSLPSPSMVV SSSSSSNSSA TNSMYNPPPS STAGYSNSLS SDNNVHYFD

Arabidopsis Description

LBD13LBD13 [Source:UniProtKB/TrEMBL;Acc:A0A178VRU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.