Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
TraesCS4A01G067300.1 | nucleus |
TraesCS4B01G224600.1 | nucleus |
TraesCS4D01G225200.1 | nucleus |
TraesCS5A01G079100.1 | nucleus |
TraesCS5B01G086900.1 | nucleus |
TraesCS5D01G093100.1 | nucleus |
TraesCS7A01G228900.1 | |
TraesCS7B01G195100.1 | |
TraesCS7D01G229900.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS3D01G397200.1 | Wheat | plastid | 98.07 | 98.07 |
TraesCS3A01G402300.1 | Wheat | plastid | 98.07 | 98.07 |
Os01t0889400-02 | Rice | plastid | 81.47 | 78.44 |
Zm00001d042560_P002 | Maize | plastid | 75.68 | 75.38 |
TraesCS1B01G270400.1 | Wheat | plastid | 70.27 | 69.2 |
OQU88012 | Sorghum | mitochondrion, vacuole | 76.83 | 59.94 |
HORVU3Hr1G090240.2 | Barley | plastid | 61.39 | 58.89 |
HORVU3Hr1G090250.5 | Barley | plastid | 61.39 | 58.89 |
Solyc03g063140.2.1 | Tomato | nucleus, plastid | 38.22 | 56.9 |
PGSC0003DMT400002549 | Potato | plastid | 38.61 | 52.91 |
AT1G65620.1 | Thale cress | plastid | 40.54 | 52.76 |
Bra039733.1-P | Field mustard | nucleus, plastid | 40.54 | 51.98 |
CDY46781 | Canola | nucleus, plastid | 40.54 | 51.98 |
CDY16414 | Canola | nucleus, plastid | 40.54 | 51.98 |
VIT_00s0340g00090.t01 | Wine grape | nucleus | 39.77 | 47.69 |
KRH20638 | Soybean | nucleus | 37.84 | 45.79 |
KRH13283 | Soybean | nucleus | 37.45 | 45.75 |
Solyc11g008830.1.1 | Tomato | plastid | 40.15 | 45.22 |
KRG88909 | Soybean | nucleus | 35.52 | 42.99 |
TraesCS5B01G150800.1 | Wheat | plastid | 27.8 | 40.68 |
TraesCS1B01G235700.1 | Wheat | mitochondrion | 28.19 | 38.62 |
TraesCS4B01G016200.1 | Wheat | plastid | 25.1 | 37.14 |
TraesCS3B01G108500.1 | Wheat | plastid | 35.14 | 35.41 |
TraesCS4B01G079900.1 | Wheat | mitochondrion, nucleus, plastid | 33.59 | 30.63 |
TraesCS1B01G080600.1 | Wheat | cytosol, plastid | 25.1 | 30.23 |
TraesCS4B01G197100.1 | Wheat | plastid | 25.87 | 30.04 |
TraesCS1B01G131900.2 | Wheat | nucleus | 27.03 | 29.54 |
TraesCS3B01G378100.1 | Wheat | plastid | 25.1 | 22.26 |
Protein Annotations
EnsemblPlants:TraesCS3B01G435700.1 | EnsemblPlantsGene:TraesCS3B01G435700 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 |
PANTHER:PTHR31301:SF33 | PFAM:PF03195 | PFscan:PS50891 | SEG:seg | MapMan:15.5.24 | : |
Description
No Description!
Coordinates
chr3B:-:674062588..674063482
Molecular Weight (calculated)
26560.5 Da
IEP (calculated)
8.119
GRAVY (calculated)
-0.009
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSASSLP APGGSVITLA VSSAGGNGAG GVCGTGSPCA ACKFLRRKCQ PDCVFAPYFP PDNPQKFVHV HRVFGASNVT KLLNELHPYQ REDAVNSLAY
101: EADMRLRDPV YGCVAVISIL QRNLRQLQQD LARAKYELSK YQSAAGPNGS QAMAEFIGSA VPNGVASFIN VGHSAALGSV GGVTGFGQDH QFAAVQMLSR
201: SYEVAEPIAR LGLNGGYEFG YSAAGMAGAG SVPGLGMLGG SPFLKPGIAG SDERGGAGQ
101: EADMRLRDPV YGCVAVISIL QRNLRQLQQD LARAKYELSK YQSAAGPNGS QAMAEFIGSA VPNGVASFIN VGHSAALGSV GGVTGFGQDH QFAAVQMLSR
201: SYEVAEPIAR LGLNGGYEFG YSAAGMAGAG SVPGLGMLGG SPFLKPGIAG SDERGGAGQ
001: MASSSTNSPC AACKFLRRKC QPECVFAPYF PPDQPQKFAN VHKVFGASNV TKLLNELHPS QREDAVNSLA YEADMRLRDP VYGCVGVISL LQHQLRQLQI
101: DLSCAKSELS KYQSLGILAA THQSLGINLL AGAADGTATA VRDHYHHHQF FPREQMFGGL DVPAGNNYDG GILAIGQITQ FQQPRAAAGD DGRRTVDPS
101: DLSCAKSELS KYQSLGILAA THQSLGINLL AGAADGTATA VRDHYHHHQF FPREQMFGGL DVPAGNNYDG GILAIGQITQ FQQPRAAAGD DGRRTVDPS
Arabidopsis Description
AS2AS2 [Source:UniProtKB/TrEMBL;Acc:A0A178WIA0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.