CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99521	nucleus
KRG99949	nucleus
KRH49100	nucleus
KRH65255
KRH66092	nucleus
KRH76281

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65620.1	KRG99521	AT2G37630.1	22822207
AT1G65620.1	KRG99949	AT2G37630.1	22822207
AT1G65620.1	KRH49100	AT2G37630.1	22822207
AT1G65620.1	KRH66092	AT2G37630.1	22822207
AT1G65620.1	KRG99521	AT2G37630.1	22822207
AT1G65620.1	KRG99949	AT2G37630.1	22822207
AT1G65620.1	KRH49100	AT2G37630.1	22822207
AT1G65620.1	KRH66092	AT2G37630.1	22822207
AT1G65620.1	KRH65255	AT4G00210.1	22822207
AT1G65620.1	KRH76281	AT4G00210.1	22822207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76093	Soybean	cytosol, endoplasmic reticulum, nucleus	29.91	59.26
KRG93235	Soybean	plastid	37.85	48.21
KRH63606	Soybean	plastid	40.65	47.8
KRH56556	Soybean	nucleus, plastid	37.85	47.65
AT1G65620.1	Thale cress	plastid	43.93	47.24
KRH54338	Soybean	plastid	40.65	47.03
KRH13283	Soybean	nucleus	46.26	46.7
KRH03242	Soybean	nucleus, plastid	41.12	46.56
Bra039733.1-P	Field mustard	nucleus, plastid	43.93	46.53
CDY46781	Canola	nucleus, plastid	43.93	46.53
CDY16414	Canola	nucleus, plastid	43.93	46.53
KRH20638	Soybean	nucleus	46.26	46.26
KRH14912	Soybean	nucleus	32.71	45.75
KRH07170	Soybean	plastid	37.38	44.44
KRH57118	Soybean	plastid	40.65	44.16
KRH73255	Soybean	mitochondrion, nucleus, plastid	31.78	44.16
VIT_00s0340g00090.t01	Wine grape	nucleus	44.39	43.98
KRG94119	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	37.38	43.96
KRH50484	Soybean	cytosol, nucleus, plastid	32.24	43.4
KRG89441	Soybean	cytosol, nucleus, plastid	32.24	42.07
KRG97685	Soybean	mitochondrion, nucleus	32.24	41.82
KRH36753	Soybean	cytosol, mitochondrion, nucleus, plastid	32.71	41.18
KRH11753	Soybean	cytosol, mitochondrion, nucleus, plastid	32.71	41.18
KRH30173	Soybean	mitochondrion, nucleus	32.71	40.7
KRG98217	Soybean	mitochondrion	32.71	40.7
KRH43747	Soybean	mitochondrion	31.78	38.42
KRH13706	Soybean	mitochondrion	31.78	38.2
KRH62409	Soybean	nucleus	37.38	37.74
KRH53127	Soybean	nucleus	35.05	36.76
TraesCS3D01G397200.1	Wheat	plastid	42.99	35.52
TraesCS3B01G435700.1	Wheat	plastid	42.99	35.52
Os01t0889400-02	Rice	plastid	44.39	35.32
TraesCS3A01G402300.1	Wheat	plastid	42.52	35.14
TraesCS1B01G270400.1	Wheat	plastid	42.99	34.98
TraesCS1D01G259900.1	Wheat	plastid	42.99	34.98
TraesCS1A01G260000.1	Wheat	plastid	42.52	34.47
Zm00001d042560_P002	Maize	plastid	41.59	34.23
HORVU3Hr1G090240.2	Barley	plastid	42.99	34.07
HORVU3Hr1G090250.5	Barley	plastid	42.99	34.07
Os05t0417000-00	Rice	plastid	44.39	34.05
KRH10407	Soybean	mitochondrion	26.64	33.14
HORVU1Hr1G064640.3	Barley	plastid	42.52	32.73
KRH57745	Soybean	nucleus	40.19	31.16
KRH53776	Soybean	nucleus	32.24	31.08
KRG89044	Soybean	nucleus, plastid	28.97	30.39
KRH24932	Soybean	nucleus, plastid	28.5	30.2
KRH64170	Soybean	nucleus	31.31	30.18
KRH22937	Soybean	plastid	27.57	29.8
KRH76950	Soybean	nucleus	41.59	29.28
Zm00001d010264_P001	Maize	plastid	36.45	28.26
KRH28509	Soybean	nucleus	40.65	28.25
OQU78015	Sorghum	plastid	40.19	27.92
OQU88012	Sorghum	mitochondrion, vacuole	42.52	27.41
Zm00001d038197_P001	Maize	plastid	35.05	26.98
KRH34918	Soybean	plastid	27.1	26.13
KRH17149	Soybean	cytosol, mitochondrion, nucleus	29.91	25.7
KRG91848	Soybean	plastid	26.64	25.68
KRH72805	Soybean	cytosol, mitochondrion, nucleus	29.91	25.3
Zm00001d047521_P001	Maize	plastid	25.7	23.31

Protein Annotations

EnsemblPlants:KRG88909	EnsemblPlantsGene:GLYMA_U012500	EntrezGene:100801155	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31301
PANTHER:PTHR31301:SF63	PFAM:PF03195	PFscan:PS50891	ProteinID:KRG88909	ProteinID:KRG88909.1	UniParc:UPI00023CB946
UniProt:I1LKJ5	MapMan:15.5.24	:	:	:	:

Description

hypothetical protein

Coordinates

chrscaffold_21:+:542365..543009

Molecular Weight (calculated)

23676.0 Da

IEP (calculated)

7.870

GRAVY (calculated)

-0.372

Length

214 amino acids

Sequence
(BLAST)

001: MASSNPPCAA CKFLRRKCQP ECVFAPYFPP DQPQRFVNVH RIFGASNVSK LLNELHPHQR EDAVNSLAYE AEMRLRDPVN GCVGIISLLH QQLRQLHMDL
101: QSAKFELSRI HNLGVTIPTG YGHTSAAVIT PVSASHVMNG ADGSYDNRYY NQQHSYHQCV PQQLVRNFVG AGNNCDEGNV LAINIASFGP LSQLQQPSAA
201: AVARDDPHTR VHHS

Best Arabidopsis Sequence Match ( AT1G65620.2 )
(BLAST)

001: MASSSTNSPC AACKFLRRKC QPECVFAPYF PPDQPQKFAN VHKVFGASNV TKLLNELHPS QREDAVNSLA YEADMRLRDP VYGCVGVISL LQHQLRQLQI
101: DLSCAKSELS KYQSLGILAA THQSLGINLL AGAADGTATA VRDHYHHHQF FPREQMFGGL DVPAGNNYDG GILAIGQITQ FQQPRAAAGD DGRRTVDPS

Arabidopsis Description

AS2AS2 [Source:UniProtKB/TrEMBL;Acc:A0A178WIA0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.